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roast
•
reset
6
votes
10
replies
1.8k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing
roast
mroast
differential gene expression
bioconductor
9.0 years ago
svlachavas
▴ 830
4
votes
6
replies
3.9k
views
limma roast syntax and interpretation
limma
roast
updated 9.5 years ago by
Gordon Smyth
50k • written 9.5 years ago by
Juliet Hannah
▴ 360
4
votes
4
replies
1.4k
views
Interpreting mroast results
mroast
limma
roast
5.5 years ago
SB
• 0
3
votes
2
replies
1.2k
views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
prabin.dm
• 0
3
votes
4
replies
2.4k
views
edgeR: no replicates & mroast
edger
roast
updated 9.5 years ago by
Gordon Smyth
50k • written 9.5 years ago by
Daniel
▴ 10
3
votes
2
replies
1.2k
views
ROAST after edgeR glmTreat and average RPKM filter
roast
edgeR
glmtreat
updated 7.7 years ago by
Aaron Lun
★ 28k • written 7.7 years ago by
b.nota
▴ 360
2
votes
2
replies
1.6k
views
Finding genes in a gene set detected by ROAST (or FRY) in limma
roast
fry
limma
updated 4.9 years ago by
Gordon Smyth
50k • written 4.9 years ago by
kentfung
▴ 20
2
votes
1
reply
1.3k
views
limma symbols2indices from gmt files versus rdata files
limma
romer
roast
updated 8.3 years ago by
Gordon Smyth
50k • written 8.3 years ago by
biominer
▴ 10
2
votes
2
replies
1.6k
views
limma roast results not in accordance with barcodeplot
roast
limma
6.0 years ago
b.nota
▴ 360
2
votes
2
replies
1.3k
views
limma roast/mroast with patient-matched pre-/post- treatment
limma
roast
mroast
block
updated 7.9 years ago by
Ryan C. Thompson
★ 7.9k • written 7.9 years ago by
barbara.shih
• 0
2
votes
2
replies
1.2k
views
Running Roast with Gene Symbols of Curated Genes
mroast
roast
gene set
gene set analysis
edgeR
updated 7.9 years ago by
James W. MacDonald
65k • written 7.9 years ago by
lattalic
• 0
1
vote
4
replies
1.3k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
5.7 years ago
Andrea Carenzo
• 0
0
votes
3
replies
1.4k
views
ROAST using curated gene sets
edgeR
mroast
roast
8.0 years ago
lattalic
• 0
13 results • Page
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Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters
by
anne-laure
• 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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shepherl
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