Bioconductor Ropls

Showing : ropls • reset

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Qtlizer ropls TransOmicsData MethylSeekR

5 weeks ago Abu 0

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444

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Metabolomics plotGrouper Bioconductor ropls PLSDAbatch

8 months ago devarti.mahakalkar • 0

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1.9k

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crlmm ropls Metabolomics

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by Charlotte • 0

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922

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Metabolomics ropls

updated 2.2 years ago by etienne.thevenot ▴ 40 • written 2.2 years ago by ansari.maya022 • 0

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Metabolomics ropls

updated 2.3 years ago by etienne.thevenot ▴ 40 • written 2.3 years ago by ansari.maya022 • 0

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1.6k

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ropls

2.7 years ago g0079 • 0

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s-plot ropls opls-da rna-seq

updated 3.6 years ago by Nathalie ▴ 10 • written 4.7 years ago by andreia ▴ 10

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2.1k

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metabolomicsWorkbenchR PLS OPLS Metabolomics ropls

updated 3.7 years ago by etienne.thevenot ▴ 40 • written 3.7 years ago by Fernando • 0

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883

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ropls

4.6 years ago guido.guberman • 0

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1.2k

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ropls

updated 4.7 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by tor.demmers • 0

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ropls

updated 6.8 years ago by etienne.thevenot ▴ 40 • written 6.8 years ago by scottericr • 0

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R ropls

updated 6.9 years ago by etienne.thevenot ▴ 40 • written 6.9 years ago by yuan.guo001 • 0

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2.3k

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ROPLS LPS-DA

7.0 years ago abigailrandall85 • 0

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plsda ropls

updated 7.5 years ago by etienne.thevenot ▴ 40 • written 7.5 years ago by michael.eisenring ▴ 10

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5.9k

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ropls

updated 8.7 years ago by etienne.thevenot ▴ 40 • written 8.7 years ago by dominik.guggisberg • 0

15 results • Page 1 of 1

Recent ...

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

A: use tximport's countsFromAbundance when using DESeq2

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