Bioconductor Ropls

Showing : ropls • reset

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Qtlizer ropls TransOmicsData MethylSeekR

11 months ago Abu 0

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832

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Metabolomics plotGrouper Bioconductor ropls PLSDAbatch

18 months ago devarti.mahakalkar • 0

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2.8k

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crlmm ropls Metabolomics

updated 2.6 years ago by James W. MacDonald 68k • written 2.6 years ago by Charlotte • 0

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Metabolomics ropls

updated 3.1 years ago by etienne.thevenot ▴ 40 • written 3.1 years ago by ansari.maya022 • 0

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1.4k

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Metabolomics ropls

updated 3.2 years ago by etienne.thevenot ▴ 40 • written 3.2 years ago by ansari.maya022 • 0

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2.1k

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ropls

3.5 years ago g0079 • 0

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s-plot ropls opls-da rna-seq

updated 4.4 years ago by Nathalie ▴ 10 • written 5.6 years ago by andreia ▴ 10

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2.6k

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metabolomicsWorkbenchR PLS OPLS Metabolomics ropls

updated 4.5 years ago by etienne.thevenot ▴ 40 • written 4.5 years ago by Fernando • 0

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1.2k

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ropls

5.4 years ago guido.guberman • 0

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1.6k

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ropls

updated 5.6 years ago by Kevin Blighe ★ 4.0k • written 5.6 years ago by tor.demmers • 0

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1.7k

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ropls

updated 7.6 years ago by etienne.thevenot ▴ 40 • written 7.6 years ago by scottericr • 0

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R ropls

updated 7.7 years ago by etienne.thevenot ▴ 40 • written 7.7 years ago by yuan.guo001 • 0

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ROPLS LPS-DA

7.9 years ago abigailrandall85 • 0

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plsda ropls

updated 8.3 years ago by etienne.thevenot ▴ 40 • written 8.4 years ago by michael.eisenring ▴ 10

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6.7k

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ropls

updated 9.6 years ago by etienne.thevenot ▴ 40 • written 9.6 years ago by dominik.guggisberg • 0

15 results • Page 1 of 1

Recent ...

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Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0

Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…

Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

Aaron Lun was a PhD student in my Lab back in 2015, when he posted the answers about allele-specific expression that you and Mike Love have…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You just need the mouse identifier (controls baseline) and the group specific allelic effect.

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Julia Broadbent • 0

Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…

Votes

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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