Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rrbs
•
reset
4
votes
5
replies
1.3k
views
edgeR for a mixture experiment
edgeR
model-selection
RRBS
mixture-experiment
3.8 years ago
ingerslev
• 0
0
votes
2
replies
1.1k
views
MethylCC for RRBS data of Cord Blood
MethylCC
RRBS
cord blood
4.5 years ago
weichen-cls
• 0
0
votes
0
replies
923
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
4.5 years ago
i.s.castanho
• 0
0
votes
1
reply
773
views
BiSeq - betaResults output only contains chr1 and chr2
biseq
betaRegression
RRBS
Methylation
4.8 years ago
i.s.castanho
• 0
5
votes
14
replies
2.4k
views
Odd P-value distribution in edgeR on RRBS data
edgeR
rrbs
updated 6.0 years ago by
Gordon Smyth
52k • written 6.0 years ago by
ingerslev
• 0
0
votes
4
replies
2.7k
views
MethylKit read in issue
methykit
rrbs
updated 6.7 years ago by
Mike Smith
★ 6.6k • written 6.7 years ago by
bekah
▴ 40
0
votes
3
replies
1.7k
views
scalability of edgeR on RRBS methylation data
edgeR
methyation
RRBS
updated 7.0 years ago by
Gordon Smyth
52k • written 7.0 years ago by
osa.zuta
▴ 40
0
votes
1
reply
1.3k
views
BiSeq - modelling options betaRegression
biseq
RRBS
betaregression
7.8 years ago
l.eijssen
• 0
1
vote
4
replies
2.1k
views
Using SVA with RRBS data
sva
RRBS
updated 7.8 years ago by
Jeff Leek
▴ 650 • written 7.8 years ago by
mrodrigues.fernanda
▴ 10
0
votes
3
replies
1.9k
views
SVA package for RRBS - bisulfite methylation data
rrbs
batch effect
methylation
sva
updated 8.3 years ago by
dashbrook1
• 0 • written 9.5 years ago by
GFM
▴ 20
4
votes
2
replies
1.7k
views
Bounded Regression with Limma for RRBS?
limma
rrbs
bsseq
updated 8.6 years ago by
Aaron Lun
★ 28k • written 8.6 years ago by
nhejazi
• 0
0
votes
5
replies
2.3k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq
RRBS
SAAP-BS
coverage
9.7 years ago
maria.maqueda
• 0
12 results • Page
1 of 1
Recent ...
Replies
Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
by
James W. MacDonald
67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue
by
k.panov
• 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package
by
Lukas
▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts
by
sindhuri
• 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package
by
James W. MacDonald
67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Awards
• All
Popular Question
to
Gordon Smyth
52k
Popular Question
to
linouhao
▴ 20
Popular Question
to
spg
• 0
Popular Question
to
otieno43
• 0
Popular Question
to
svlachavas
▴ 840
Locations
• All
United States,
5 minutes ago
San Diego,
28 minutes ago
United States,
28 minutes ago
United States,
32 minutes ago
United States,
1 hour ago
Traffic: 906 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6