Bioconductor Rrbs

Showing : rrbs • reset

votes

replies

2.0k

views

edgeR rrbs

updated 5.3 years ago by Gordon Smyth 50k • written 5.3 years ago by ingerslev • 0

votes

replies

2.0k

views

biseq RRBS SAAP-BS coverage

9.0 years ago maria.maqueda • 0

votes

replies

1.0k

views

edgeR model-selection RRBS mixture-experiment

3.1 years ago ingerslev • 0

vote

replies

1.8k

views

sva RRBS

updated 7.1 years ago by Jeff Leek ▴ 650 • written 7.1 years ago by mrodrigues.fernanda ▴ 10

votes

replies

2.2k

views

methykit rrbs

updated 6.0 years ago by Mike Smith ★ 6.5k • written 6.0 years ago by bekah ▴ 40

votes

replies

1.7k

views

rrbs batch effect methylation sva

updated 7.6 years ago by dashbrook1 • 0 • written 8.8 years ago by GFM ▴ 20

votes

replies

1.5k

views

edgeR methyation RRBS

updated 6.3 years ago by Gordon Smyth 50k • written 6.3 years ago by osa.zuta ▴ 40

votes

replies

838

views

MethylCC RRBS cord blood

3.8 years ago weichen-cls • 0

votes

replies

1.4k

views

limma rrbs bsseq

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by nhejazi • 0

votes

1.1k

views

biseq RRBS betaregression

7.1 years ago l.eijssen • 0

votes

608

views

biseq betaRegression RRBS Methylation

4.1 years ago i.s.castanho • 0

votes

replies

750

views

Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

12 results • Page 1 of 1

Recent ...

Replies

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Votes

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Awards • All

Popular Question to rohitsatyam102 ▴ 20