Bioconductor Salmon

Showing : salmon • reset

votes

replies

1.6k

views

salmon edgeR tximport nf-core gene_counts

updated 14 days ago by i.atanasoai • 0 • written 15 months ago by mohammedtoufiq91 ▴ 10

votes

replies

1.4k

views

DESeq2 tximport counts Salmon

updated 10 weeks ago by Michael Love 41k • written 16 months ago by kiqbal • 0

votes

replies

305

views

swish salmon fishpond

updated 3 months ago by Michael Love 41k • written 3 months ago by Nicholas • 0

vote

replies

2.8k

views

salmon DESeq2

updated 5 months ago by bella.johnson.2022 • 0 • written 2.3 years ago by Sneha • 0

votes

replies

426

views

salmon tximport deseq2

updated 6 months ago by Michael Love 41k • written 6 months ago by Kayleigh • 0

vote

replies

1.5k

views

salmon IsoformSwitchAnalyzeR tximport RNASeqData

updated 9 months ago by k.vitting.seerup ▴ 120 • written 9 months ago by elva.gypsophila ▴ 10

votes

replies

3.0k

views

tximport dtu salmon TPM rnaseqDTU

written 5.1 years ago by fiona.dick91 ▴ 60

votes

replies

683

views

rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Votes

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Awards • All