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limma SANTA

15.2 years ago • updated 5.4 years ago Gordon Smyth 51k

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limma SANTA limma SANTA

updated 5.4 years ago by Gordon Smyth 51k • written 15.2 years ago by Marcelo Laia ▴ 450

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SANTA SANTA

12.5 years ago mabawsa ▴ 20

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Microarray SANTA Microarray SANTA

12.6 years ago Ramiro Rodríguez ▴ 30

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Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes

13.1 years ago Claude Chelala ▴ 40

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RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA

13.3 years ago stefano iacus ▴ 430

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Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA

updated 14.4 years ago by Ping Ma ▴ 10 • written 14.4 years ago by Hervé Pagès 16k

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limma SANTA limma SANTA

15.2 years ago Naomi Altman ★ 6.0k

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Annotation limma SANTA Annotation limma SANTA

15.2 years ago Gordon Smyth 51k

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Microarray SANTA Microarray SANTA

15.2 years ago Marcelo Laia ▴ 450

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Annotation limma SANTA Annotation limma SANTA

15.2 years ago Marcelo Laia ▴ 450

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Normalization probe limma SANTA Normalization probe limma SANTA

updated 15.4 years ago by Erika Melissari ▴ 250 • written 15.4 years ago by Francois Pepin ★ 1.3k

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graph limma SANTA graph limma SANTA

15.7 years ago Marcelo Laia ▴ 450

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ArrayExpress SANTA ArrayExpress SANTA

updated 15.8 years ago by Martin Morgan 25k • written 15.8 years ago by Yovanny Izquierdo Núñez ▴ 20

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Microarray Genetics Classification SANTA Microarray Genetics Classification SANTA

19.6 years ago Higgs, Debi ▴ 10

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SANTA SANTA

updated 19.9 years ago by Harry Mangalam ▴ 60 • written 19.9 years ago by Lelivelt, Mike ▴ 50

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plier SANTA plier SANTA

updated 20.1 years ago by Francois Collin ▴ 50 • written 20.1 years ago by Lelivelt, Mike ▴ 50

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Microarray SANTA Microarray SANTA

21.0 years ago VanLieu, Connie ▴ 10

18 results • Page 1 of 1

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

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A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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