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limma technical replicates and biological replicates in same design
limma
SANTA
16.0 years ago • updated 6.3 years ago
Gordon Smyth
53k
0
votes
1
reply
1.4k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
updated 6.3 years ago by
Gordon Smyth
53k • written 16.0 years ago by
Marcelo Laia
▴ 450
0
votes
0
replies
1.4k
views
FOSBE 2012
SANTA
SANTA
13.4 years ago
mabawsa
▴ 20
0
votes
5
replies
1.5k
views
Selected probes from a given probeset
Microarray
SANTA
Microarray
SANTA
13.5 years ago • updated 13.4 years ago
Ramiro Rodríguez
▴ 30
0
votes
0
replies
1.6k
views
Bioinformatics course - October 2011 Registration is now open
Microarray
Cancer
biomaRt
ArrayExpress
genomes
SANTA
Microarray
Cancer
biomaRt
genomes
14.0 years ago
Claude Chelala
▴ 40
0
votes
0
replies
1.8k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
14.1 years ago
stefano iacus
▴ 430
0
votes
1
reply
1.5k
views
question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 15.3 years ago by
Ping Ma
▴ 10 • written 15.3 years ago by
Hervé Pagès
16k
0
votes
0
replies
1.1k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
16.0 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 79, Issue 20
Annotation
limma
SANTA
Annotation
limma
SANTA
16.0 years ago
Gordon Smyth
53k
0
votes
0
replies
1.0k
views
OFF TOPIC high-density SSU rRNA microarray
Microarray
SANTA
Microarray
SANTA
16.0 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.1k
views
[limma] Possible bug on read.maimages function ?
Annotation
limma
SANTA
Annotation
limma
SANTA
16.0 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.5k
views
help needed on avereps function
Normalization
probe
limma
SANTA
Normalization
probe
limma
SANTA
updated 16.3 years ago by
Erika Melissari
▴ 250 • written 16.3 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
1.6k
views
limma Time Course Experiments question
graph
limma
SANTA
graph
limma
SANTA
16.5 years ago
Marcelo Laia
▴ 450
0
votes
5
replies
2.3k
views
Expressionset from ArrayExpress processed data
ArrayExpress
SANTA
ArrayExpress
SANTA
updated 16.7 years ago by
Martin Morgan
25k • written 16.7 years ago by
Yovanny Izquierdo Núñez
▴ 20
0
votes
0
replies
1.3k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray
Genetics
Classification
SANTA
Microarray
Genetics
Classification
SANTA
20.5 years ago
Higgs, Debi
▴ 10
0
votes
4
replies
1.7k
views
Affymetrix file parsers released under LGPL open source license
SANTA
SANTA
updated 20.8 years ago by
Harry Mangalam
▴ 60 • written 20.8 years ago by
Lelivelt, Mike
▴ 50
0
votes
1
reply
1.4k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 21.0 years ago by
Francois Collin
▴ 50 • written 21.0 years ago by
Lelivelt, Mike
▴ 50
0
votes
0
replies
1.2k
views
Affymetrix Postdoctoral Opportunity
Microarray
SANTA
Microarray
SANTA
21.9 years ago
VanLieu, Connie
▴ 10
18 results • Page
1 of 1
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Comment: Error Loading Experiment from SimBenchData Package
by
ATpoint
★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups
by
Gordon Smyth
53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub
by
Peter Hickey
▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ReinholdGaylord99
• 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Votes
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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