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limma technical replicates and biological replicates in same design
limma
SANTA
15.5 years ago • updated 5.7 years ago
Gordon Smyth
52k
0
votes
1
reply
1.4k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
updated 5.7 years ago by
Gordon Smyth
52k • written 15.5 years ago by
Marcelo Laia
▴ 450
0
votes
0
replies
1.3k
views
FOSBE 2012
SANTA
SANTA
12.8 years ago
mabawsa
▴ 20
0
votes
5
replies
1.4k
views
Selected probes from a given probeset
Microarray
SANTA
Microarray
SANTA
12.9 years ago
Ramiro Rodríguez
▴ 30
0
votes
0
replies
1.5k
views
Bioinformatics course - October 2011 Registration is now open
Microarray
Cancer
biomaRt
ArrayExpress
genomes
SANTA
Microarray
Cancer
biomaRt
genomes
13.4 years ago
Claude Chelala
▴ 40
0
votes
0
replies
1.7k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
13.6 years ago
stefano iacus
▴ 430
0
votes
1
reply
1.4k
views
question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 14.7 years ago by
Ping Ma
▴ 10 • written 14.7 years ago by
Hervé Pagès
16k
0
votes
0
replies
1.0k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
15.5 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 79, Issue 20
Annotation
limma
SANTA
Annotation
limma
SANTA
15.5 years ago
Gordon Smyth
52k
0
votes
0
replies
954
views
OFF TOPIC high-density SSU rRNA microarray
Microarray
SANTA
Microarray
SANTA
15.5 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.1k
views
[limma] Possible bug on read.maimages function ?
Annotation
limma
SANTA
Annotation
limma
SANTA
15.5 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.4k
views
help needed on avereps function
Normalization
probe
limma
SANTA
Normalization
probe
limma
SANTA
updated 15.7 years ago by
Erika Melissari
▴ 250 • written 15.7 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
1.6k
views
limma Time Course Experiments question
graph
limma
SANTA
graph
limma
SANTA
16.0 years ago
Marcelo Laia
▴ 450
0
votes
5
replies
2.1k
views
Expressionset from ArrayExpress processed data
ArrayExpress
SANTA
ArrayExpress
SANTA
updated 16.1 years ago by
Martin Morgan
25k • written 16.1 years ago by
Yovanny Izquierdo Núñez
▴ 20
0
votes
0
replies
1.2k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray
Genetics
Classification
SANTA
Microarray
Genetics
Classification
SANTA
19.9 years ago
Higgs, Debi
▴ 10
0
votes
4
replies
1.6k
views
Affymetrix file parsers released under LGPL open source license
SANTA
SANTA
updated 20.2 years ago by
Harry Mangalam
▴ 60 • written 20.2 years ago by
Lelivelt, Mike
▴ 50
0
votes
1
reply
1.3k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 20.4 years ago by
Francois Collin
▴ 50 • written 20.4 years ago by
Lelivelt, Mike
▴ 50
0
votes
0
replies
1.1k
views
Affymetrix Postdoctoral Opportunity
Microarray
SANTA
Microarray
SANTA
21.3 years ago
VanLieu, Connie
▴ 10
18 results • Page
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Comment: sesameDataCache is not work properly on my system
by
Samreen
• 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data
by
James W. MacDonald
68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format
by
James W. MacDonald
68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages?
by
wilkinson
• 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification
by
ATpoint
★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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