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limma technical replicates and biological replicates in same design
limma SANTA
16.4 years ago • updated 6.7 years ago Gordon Smyth 53k
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limma technical replicates and biological replicates in the same design
limma SANTA limma SANTA
updated 6.7 years ago by 53k • written 16.4 years ago by ▴ 450
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FOSBE 2012
SANTA SANTA
13.8 years ago mabawsa ▴ 20
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Selected probes from a given probeset
Microarray SANTA Microarray SANTA
13.8 years ago Ramiro Rodríguez ▴ 30
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Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
14.3 years ago Claude Chelala ▴ 40
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
14.5 years ago stefano iacus ▴ 430
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question on makeTranscriptDbFromUCSC
Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA
updated 15.7 years ago by ▴ 10 • written 15.7 years ago by 16k
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limma technical replicates and biological replicates in the same design
limma SANTA limma SANTA
16.4 years ago Naomi Altman ★ 6.0k
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Bioconductor Digest, Vol 79, Issue 20
Annotation limma SANTA Annotation limma SANTA
16.4 years ago Gordon Smyth 53k
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OFF TOPIC high-density SSU rRNA microarray
Microarray SANTA Microarray SANTA
16.4 years ago Marcelo Laia ▴ 450
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[limma] Possible bug on read.maimages function ?
Annotation limma SANTA Annotation limma SANTA
16.4 years ago Marcelo Laia ▴ 450
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help needed on avereps function
Normalization probe limma SANTA Normalization probe limma SANTA
updated 16.7 years ago by ▴ 250 • written 16.7 years ago by ★ 1.3k
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limma Time Course Experiments question
graph limma SANTA graph limma SANTA
16.9 years ago Marcelo Laia ▴ 450
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Expressionset from ArrayExpress processed data
ArrayExpress SANTA ArrayExpress SANTA
updated 17.1 years ago by 25k • written 17.1 years ago by ▴ 20
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Job: Statistical Analyst - Affymetrix, Inc.
Microarray Genetics Classification SANTA Microarray Genetics Classification SANTA
20.9 years ago Higgs, Debi ▴ 10
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Affymetrix file parsers released under LGPL open source license
SANTA SANTA
updated 21.2 years ago by ▴ 60 • written 21.2 years ago by ▴ 50
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PLIER is available as open source
plier SANTA plier SANTA
updated 21.4 years ago by ▴ 50 • written 21.4 years ago by ▴ 50
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Affymetrix Postdoctoral Opportunity
Microarray SANTA Microarray SANTA
22.2 years ago VanLieu, Connie ▴ 10
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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for by Gordon Smyth 53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
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Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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