Showing : santa • reset
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limma technical replicates and biological replicates in same design
limma SANTA
14.6 years ago • updated 4.8 years ago Gordon Smyth 50k
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limma technical replicates and biological replicates in the same design
limma SANTA limma SANTA
updated 4.8 years ago by 50k • written 14.6 years ago by ▴ 450
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FOSBE 2012
SANTA SANTA
11.9 years ago mabawsa ▴ 20
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Selected probes from a given probeset
Microarray SANTA Microarray SANTA
12.0 years ago Ramiro Rodríguez ▴ 30
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Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
12.5 years ago Claude Chelala ▴ 40
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
12.7 years ago stefano iacus ▴ 430
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question on makeTranscriptDbFromUCSC
Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA
updated 13.8 years ago by ▴ 10 • written 13.8 years ago by 16k
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limma technical replicates and biological replicates in the same design
limma SANTA limma SANTA
14.6 years ago Naomi Altman ★ 6.0k
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Bioconductor Digest, Vol 79, Issue 20
Annotation limma SANTA Annotation limma SANTA
14.6 years ago Gordon Smyth 50k
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OFF TOPIC high-density SSU rRNA microarray
Microarray SANTA Microarray SANTA
14.6 years ago Marcelo Laia ▴ 450
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[limma] Possible bug on read.maimages function ?
Annotation limma SANTA Annotation limma SANTA
14.6 years ago Marcelo Laia ▴ 450
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help needed on avereps function
Normalization probe limma SANTA Normalization probe limma SANTA
updated 14.8 years ago by ▴ 250 • written 14.8 years ago by ★ 1.3k
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limma Time Course Experiments question
graph limma SANTA graph limma SANTA
15.1 years ago Marcelo Laia ▴ 450
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Expressionset from ArrayExpress processed data
ArrayExpress SANTA ArrayExpress SANTA
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 20
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Job: Statistical Analyst - Affymetrix, Inc.
Microarray Genetics Classification SANTA Microarray Genetics Classification SANTA
19.0 years ago Higgs, Debi ▴ 10
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Affymetrix file parsers released under LGPL open source license
SANTA SANTA
updated 19.4 years ago by ▴ 60 • written 19.4 years ago by ▴ 50
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PLIER is available as open source
plier SANTA plier SANTA
updated 19.5 years ago by ▴ 50 • written 19.5 years ago by ▴ 50
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Affymetrix Postdoctoral Opportunity
Microarray SANTA Microarray SANTA
20.4 years ago VanLieu, Connie ▴ 10
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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