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scRNASeq
•
reset
1
vote
5
replies
861
views
Recommendation for large.n in filterByExpr
scRNAseq
edgeR
SingleCellExperiment
9 months ago • updated 8 months ago
duez.tolga
• 0
2
votes
3
replies
1.3k
views
P-value histogram of testLinearModel is not uniform
smart-seq2
scRNAseq
scran
11 months ago • updated 10 months ago
Lluís Revilla Sancho
▴ 730
0
votes
1
reply
570
views
library(topGO) query
topGO
scRNAseq
updated 9 months ago by
Basti
▴ 780 • written 9 months ago by
Francesco
• 0
0
votes
2
replies
516
views
scRNA analysis : DEG between low and high-expressing cells
scRNAseq
7 months ago
Momo
• 0
0
votes
2
replies
924
views
Single-Cell Data Simulation from Bulk RNA-seq
SingleCell
RNASeq
RNASeqData
scRNAseq
updated 20 days ago by
wichaidi
• 0 • written 17 months ago by
irvin.ng
• 0
1
vote
11
replies
3.5k
views
Error: Bioconductor version cannot be validated; no internet connection?
scRNAseq
updated 6 months ago by
Manuel
• 0 • written 10 months ago by
Elham
• 0
1
vote
2
replies
821
views
ScRNAseq analysis scran :: quickcluster Error
scRNAseq
quickcluster
scRNA
scran
5 months ago
ruba-mahmoud
• 0
0
votes
1
reply
1.0k
views
DESeq2 error after installing BiocManager
scRNAseq
RStudio
DESeq2
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
DrFizz
• 0
0
votes
2
replies
686
views
Could not find function "Standard Chromosomes"
scrna
scRNAseq
updated 6 months ago by
Gabriella
• 0 • written 14 months ago by
sarah.jobbins
• 0
0
votes
2
replies
218
views
Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
7 weeks ago
rocanja
▴ 60
0
votes
1
reply
420
views
If highly-expressed genes are upregulated, what happens to genes with lower expression after normalization?
scRNA
scRNAseq
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
Omer
• 0
4
votes
3
replies
1.0k
views
Custom design for scRNA DGE with pseudobulking
scRNAseq
scrna
paireddesign
edgeR
pseudobulking
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
garcia
• 0
0
votes
1
reply
142
views
Can you find the correct transcript in scRNA seq data
scRNAseq
RNAseq
updated 28 days ago by
ATpoint
★ 4.1k • written 29 days ago by
Merav
• 0
0
votes
1
reply
389
views
FALSE error when checking a pre made sample data
Rstudio
scRNAseq
DESeq2
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
DrFizz
• 0
0
votes
1
reply
254
views
How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 10 weeks ago by
ATpoint
★ 4.1k • written 10 weeks ago by
sodiogoes
• 0
0
votes
0
replies
490
views
News:
course - single-cell RNAseq data analysis with R and Bioconductor
Workshop
scRNAseq
11 months ago
info
▴ 10
0
votes
0
replies
356
views
adding noise to scRNA Seq counts
scRNAseq
9 months ago
Jiyuan
• 0
17 results • Page
1 of 1
Recent ...
Replies
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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DevelopingHippo
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Robert Castelo
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Gyan Prakash Mishra
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Gordon Smyth
50k
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WouterDeCoster
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