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sce
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2
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5
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Merging multiple single cell experiment objects from different samples
sce
SingleCellExperiment
merge
updated 14 months ago by
mollyab12
• 0 • written 2.0 years ago by
achoppe
▴ 10
1
vote
2
replies
1.8k
views
ident function in sce
SingleCellExperiment
cluster
identities
sce
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
reinepapillon
• 0
0
votes
1
reply
1.2k
views
Clearer error messages in SingleCellExperiment cbind
singlecellexperiment
sce
scater
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
bharris
• 0
2
votes
4
replies
2.3k
views
Quality control in SingleCellExperiment
SingleCellExperiment
scater
sce
quality control
updated 3.3 years ago by
1498554536
• 0 • written 4.1 years ago by
Linda
• 0
3
votes
3
replies
1.4k
views
Different number of marker genes between same clusters
sce
markers
single cell
DE
clusters
4.6 years ago
ludmi.b
• 0
4
votes
7
replies
4.5k
views
removing rows from SingleCellExperiment container
sce
singlecellexperiment
scRNAseq
subsetting
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
TJ
• 0
1
vote
2
replies
877
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
thebadpenny
• 0
0
votes
2
replies
1.0k
views
How to process ids containing "." in BiomaRt?
sce
biomart
annotation
updated 6.8 years ago by
Mike Smith
★ 6.5k • written 6.8 years ago by
linda.c.dansereau
• 0
8 results • Page
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Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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