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segmentation
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
3.3 years ago
raven1306
• 0
0
votes
1
reply
1.2k
views
PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN
CNV
CNA
segmentation
calculateTangentNormal
updated 5.9 years ago by
markus.riester
▴ 130 • written 5.9 years ago by
sruddy17
• 0
0
votes
0
replies
1.2k
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Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
6.8 years ago
jlarsen728
• 0
1
vote
5
replies
1.7k
views
CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
7.3 years ago
Jenny.chien
• 0
0
votes
3
replies
2.2k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA
Cancer
dnacopy
segmentation
updated 8.4 years ago by
markus.riester
▴ 130 • written 8.4 years ago by
Luisa672
• 0
1
vote
2
replies
1.8k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy
segmentation
CBS
updated 8.8 years ago by
Venkat Seshan
▴ 30 • written 8.8 years ago by
W. C.
▴ 10
0
votes
2
replies
1.6k
views
GCRMA segmentation fault
gcrma
segmentation
fault
segfault
updated 9.6 years ago by
James W. MacDonald
68k • written 9.6 years ago by
kazi
• 0
7 results • Page
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Answer: How can I correctly use phyloseq with Docker?
by
Kevin Blighe
★ 4.0k
The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …
Answer: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
by
Kevin Blighe
★ 4.0k
Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…
Answer: Install old version of DESeq2
by
Kevin Blighe
★ 4.0k
The Dockerfile that you have provided is appropriate for installing DESeq2 and apeglm from Bioconductor release 3.10, which corresponds to …
Answer: Guidance Requested on GCN Network Analysis and Module Enrichment in R
by
Kevin Blighe
★ 4.0k
The discrepancy between `final_exp1` and `final_exp2` could arise from several factors, despite matching dimensions. The `identical()` func…
Answer: ORFik: spliced 5utr regions
by
Kevin Blighe
★ 4.0k
Hello Luna. The findUORFs function in ORFik identifies upstream open reading frames by extracting and concatenating the sequences of exo…
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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