Showing : segmentation • reset
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM Segmentation CINdex VCF Data
3.2 years ago raven1306 • 0
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PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN CNV CNA segmentation calculateTangentNormal
updated 5.9 years ago by ▴ 130 • written 5.9 years ago by • 0
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Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation reference CNA TCGA
6.7 years ago jlarsen728 • 0
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5
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CRImage createTrainingSet package is not available to install
classification segmentation cell types image analysis crimage
7.2 years ago Jenny.chien • 0
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Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA Cancer dnacopy segmentation
updated 8.3 years ago by ▴ 130 • written 8.3 years ago by • 0
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1.7k
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DNAcopy segmentation issue: min.width argument not working?
dnacopy segmentation CBS
updated 8.7 years ago by ▴ 30 • written 8.7 years ago by ▴ 10
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1.6k
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GCRMA segmentation fault
gcrma segmentation fault segfault
updated 9.6 years ago by 68k • written 9.6 years ago by • 0
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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