Bioconductor Select

Showing : select • reset

votes

replies

857

views

Select Annotation Dbi Custom

updated 3.6 years ago by James W. MacDonald 63k • written 3.6 years ago by ekl • 0

votes

744

views

affymetrix microarrays hta20transcriptcluster r select

updated 4.4 years ago by James W. MacDonald 63k • written 4.4 years ago by Pindre • 0

vote

replies

1.1k

views

uniprot.ws select

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by alxcho ▴ 10

votes

replies

5.5k

views

bioconductor dplyr select

updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by abedini.jaleh ▴ 10

votes

replies

1.2k

views

uniprot.ws select

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by sarah.sandmann • 0

vote

replies

894

views

annotationdbi select

7.2 years ago • updated 7.1 years ago Rockbar • 0

votes

replies

2.8k

views

org.mm.eg.db select list

updated 7.7 years ago by James W. MacDonald 63k • written 7.7 years ago by Assa Yeroslaviz ★ 1.5k

votes

replies

4.5k

views

org.hs.eg.db select

7.7 years ago Brian Smith ▴ 120

votes

replies

1.3k

views

org.hs.eg.db select

8.1 years ago tina.khajeh • 0

vote

replies

10.0k

views

annotationdbi org.mm.eg.db org.dm.eg.db select

8.1 years ago Patrick Schorderet ▴ 20

10 results • Page 1 of 1

Recent ...

Replies

Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k

You should use `removeBatchEffect` for that.

Comment: Interpret plot from DiffBind by Chris • 0

Thank you for the explanation! The purple (**gain**) in the control in the right bottom corner but on the y axis is labeled **loss** which …

Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Thank you! I think that makes much sense to me.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …

Comment: Interpret plot from DiffBind by Chris • 0

Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?

Votes

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

Awards • All

Scholar to Mike Smith ★ 6.0k