Showing : sequencing • reset
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Erros in crlmm Re: SNP 6 chip
SNP Sequencing affy oligo xps crlmm SNP Sequencing affy oligo xps crlmm
14.0 years ago Benilton Carvalho ★ 4.3k
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7
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1.7k
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SNP 6 chip
SNP Sequencing affy SNP Sequencing affy
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 210
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Postdoctoral position in biostatistics/bioinformatics/computational biology
Sequencing Microarray Sequencing Microarray
14.0 years ago Medvedovic, Mario medvedm ▴ 20
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1
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1.2k
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Regarding subread vignette
Sequencing Alignment Rsubread Sequencing Alignment Rsubread
14.0 years ago Wei Shi ★ 3.6k
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[Job] Functional genomic analysis of cancer/RNAi screening
Transcription Sequencing Genetics Pathways Cancer Prostate Transcription Sequencing Cancer
14.0 years ago Sean Davis 21k
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3
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1.8k
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Chip-seq quality control
Sequencing Sequencing
updated 14.1 years ago by ▴ 310 • written 14.1 years ago by ▴ 330
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Postdoctoral positions at EMBL
Sequencing Genetics GO Network Cancer genomes Sequencing Genetics GO Network Cancer
14.1 years ago Wolfgang Huber ★ 13k
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4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
14.2 years ago mattia pelizzola ▴ 200
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1.4k
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Bioinformatics position in CIAT, Colombia
Sequencing Annotation Sequencing Annotation
14.2 years ago Sarah Ayling ▴ 10
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840
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two-day conference "Statistical Analyses for Next Generation Sequencing"
Sequencing Sequencing
14.2 years ago Xiangqin Cui ▴ 20
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question about mt.maxT output (multtest)
Sequencing Microarray Category Sequencing Microarray Category
14.4 years ago Les Dethlefsen ▴ 20
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question/issue with multtest mt.maxT
Sequencing Microarray GUI Category Sequencing Microarray GUI Category
14.4 years ago Les Dethlefsen ▴ 20
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Statistical Bioinformatics Position In Oxford
Sequencing Sequencing
14.4 years ago Steve Taylor ▴ 280
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1.1k
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Job opening in Boston, USA
Sequencing Microarray Cancer Sequencing Microarray Cancer
14.5 years ago Wittner, Ben ▴ 290
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1
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1.3k
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BioC in the cloud (was Re: [Bioc-devel] Bioconductor 2.8 is released)
Sequencing Rgraphviz Sequencing Rgraphviz
updated 14.5 years ago by ▴ 20 • written 14.5 years ago by ★ 8.2k
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DESeq - non-differential expression
Sequencing miRNA Genetics DESeq Sequencing miRNA Genetics DESeq
updated 14.5 years ago by ▴ 180 • written 14.5 years ago by ▴ 10
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3
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[Bioc-sig-seq] Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Survival
updated 14.5 years ago by ▴ 310 • written 14.5 years ago by ★ 8.2k
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4
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1.9k
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Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Network
updated 14.5 years ago by ▴ 310 • written 14.5 years ago by ★ 8.2k
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13
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3.6k
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multiple hits with countOverlaps function
Sequencing GenomicFeatures Sequencing GenomicFeatures
14.5 years ago Wei Shi ★ 3.6k
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1.1k
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[Course] CSAMA 2011: Computational Statistics for Genome Biology (Ninth Edition)
Sequencing Microarray Alignment Annotation Clustering Cancer Biostrings AnnotationDbi
14.5 years ago stefano iacus ▴ 430
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Bioinformatics Post-doc in Melbourne
Sequencing Sequencing
14.6 years ago Alicia Oshlack ▴ 70
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3
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1.4k
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Lapply for two GRanges objects?
Sequencing Cancer Sequencing Cancer
updated 14.6 years ago by 25k • written 14.6 years ago by ▴ 260
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772
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Open PhD position
Sequencing Genetics Sequencing Genetics
14.6 years ago Robinson, Peter ▴ 100
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2.2k
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Single nucleotide based RNAseq normalization with edgeR
Sequencing RNASeq Normalization edgeR Sequencing RNASeq Normalization edgeR
updated 14.7 years ago by ▴ 20 • written 14.7 years ago by 53k
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690
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Single nucleotide based RNAseq normalization with edgeR?
Sequencing Normalization edgeR Sequencing Normalization edgeR
14.7 years ago Jens Georg ▴ 20
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1.3k
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Bioinformatics jobs -HT sequencing and more
Sequencing Genetics Sequencing Genetics
14.8 years ago Paul Leo ▴ 970
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1
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2.3k
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DESeq with no replicates
Sequencing miRNA SmallRNA DESeq Sequencing miRNA SmallRNA DESeq
updated 14.9 years ago by ★ 13k • written 14.9 years ago by ▴ 350
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1.0k
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Accessing next gen sequence data remotely via biocondcutor
Sequencing Rsamtools Sequencing Rsamtools
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 270
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Introductory course on GeneChip®Exon 1.0 ST & NGS microRNA data analysis Feb 2011
Sequencing microRNA Sequencing microRNA
14.9 years ago raffaele calogero ▴ 500
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SOLiD color space data
Sequencing Sequencing
updated 14.9 years ago by ▴ 500 • written 14.9 years ago by ▴ 460
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968
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equiry about GAGE
Sequencing gage Sequencing gage
14.9 years ago Luo Weijun ★ 1.6k
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1.8k
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Writing table from DGEExact object (edgeR)
Sequencing edgeR Sequencing edgeR
updated 14.9 years ago by ★ 1.1k • written 14.9 years ago by ▴ 10
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New gage package: Generally Applicable Gene-set/Pathway Analysis
Sequencing Microarray Pathways GO Yeast gage Sequencing Microarray Pathways GO Yeast
15.0 years ago Luo Weijun ★ 1.6k
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4
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1.9k
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faster way to get differential calls from pileup?
SNP Sequencing PROcess SNP Sequencing PROcess
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 260
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1.5k
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Job Posting: Scientific Programmer
Sequencing Cancer cdf Sequencing Cancer cdf
15.0 years ago Greg Finak ▴ 240
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1
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1.3k
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ShortRead for sequencing data quality assessment
Sequencing ShortRead Sequencing ShortRead
updated 15.1 years ago by ★ 6.8k • written 15.1 years ago by ▴ 360
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help - where to start
Sequencing Sequencing
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 330
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Course announcement: Statistical Methods for mRNA-Seq and ChIP-seq using Bioconductor
Sequencing Normalization Sequencing Normalization
15.1 years ago Joaquin Dopazo ▴ 10
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1.8k
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ShortRead for sequencing data quality assessment
Sequencing ShortRead Sequencing ShortRead
15.1 years ago heyi xiao ▴ 360
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1.4k
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Position for a Computational Biologist/Geneticist, Plant Sciences, Cambridge, UK
Sequencing Genetics Arabidopsis thaliana Sequencing Genetics Arabidopsis thaliana
15.1 years ago Krys Kelly ▴ 270
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1.4k
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Job vacancies, University of Cambridge, UK
Sequencing Sequencing
15.2 years ago Krys Kelly ▴ 270
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5
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2.7k
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downloading different kinds of microarray data
Sequencing Microarray Genetics Annotation gpls convert GEOquery GEOmetadb Sequencing gpls
updated 15.2 years ago by ▴ 30 • written 15.2 years ago by 21k
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2.2k
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Bacterial genomics
Sequencing Microarray qPCR genomes Sequencing Microarray qPCR genomes
updated 15.2 years ago by 16k • written 15.2 years ago by ▴ 30
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947
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Statistical Bioinformatician/Geneticist Position at Oxford, UK
Sequencing Sequencing
15.2 years ago Steve Taylor ▴ 280
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3
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1.6k
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ShortRead QA
Sequencing ShortRead Sequencing ShortRead
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 650
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2
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1.2k
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next-generation sequencing and embryogenisis
Sequencing SAGE Coverage Sequencing SAGE Coverage
updated 15.3 years ago by ▴ 330 • written 15.3 years ago by ▴ 20
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2.8k
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dispersion in edgeR
Sequencing edgeR
15.3 years ago • updated 3.4 years ago Gordon Smyth 53k
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2
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2.7k
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edgeR question tags per million
Sequencing Sequencing
updated 15.4 years ago by ★ 1.1k • written 15.4 years ago by ▴ 860
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BioC 2010 Conference Update
Sequencing SAGE Genetics Sequencing SAGE Genetics
15.4 years ago Martin Morgan 25k
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0
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19k
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
15.4 years ago David Lyon ▴ 340
308 results • Page 5 of 7
Recent ...
Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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