Showing : sequencing • reset
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Experimental design for RNA-Seq
Sequencing qPCR Cancer Sequencing qPCR Cancer
15.4 years ago Jakob Hedegaard ▴ 170
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Bioconductor Developer Meeting - Heidelberg 17./18. Nov 2010
Sequencing Annotation Sequencing Annotation
15.5 years ago Wolfgang Huber ★ 13k
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Two bioinformatics positions in Bordeaux, France
SNP Sequencing Genetics Cancer Breast SNP Sequencing Genetics Cancer Breast
15.5 years ago Audrey Kauffmann ▴ 110
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Computational Biology Positions at EMBL (Heidelberg)
Sequencing Genetics genomes Sequencing Genetics genomes
15.6 years ago Wolfgang Huber ★ 13k
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Query
Sequencing Sequencing
updated 15.7 years ago by 25k • written 15.7 years ago by ▴ 10
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Converting data into MAlist to use in LIMMA
Sequencing Microarray Annotation Normalization affy convert Sequencing Microarray affy
updated 15.7 years ago by ★ 1.9k • written 15.7 years ago by ▴ 60
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stranded findOverlaps
Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO
15.7 years ago Robert Castelo ★ 3.4k
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Distinguish Synonymous vs. Non-synonymous SNPs
Sequencing Biostrings biomaRt Sequencing Biostrings biomaRt
15.7 years ago Michael Dondrup ▴ 550
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2 post-doc and one PhD positions at the Bioinformatics and Genomics Department of the Centro de Investigaciones Príncipe Felipe, Valencia, Spain.
Sequencing Sequencing
15.8 years ago Ana Conesa ▴ 340
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Position for Computational Scientist at EMBL
Sequencing Genetics genomes Sequencing Genetics genomes
15.8 years ago Wolfgang Huber ★ 13k
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BioC Course 27-29 Jan 10: Introduction to R and Bioconductor
Sequencing Microarray Preprocessing Sequencing Microarray Preprocessing
15.9 years ago Patrick Aboyoun ★ 1.6k
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European Developers' Meeting, 2010
Sequencing Sequencing
updated 15.9 years ago by ▴ 10 • written 15.9 years ago by ★ 1.1k
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how to compare 3 different array platforms by matchprobes?
Sequencing probe matchprobes Sequencing probe matchprobes
updated 15.9 years ago by ★ 13k • written 15.9 years ago by ▴ 10
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Bioinformaticians for Next Gen Seq
Sequencing Sequencing
15.9 years ago Sudeshna Guha Neogi ▴ 10
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Training course at EBI, Cambridge, UK, Feb 1-5
Sequencing Microarray Annotation Normalization Preprocessing probe Sequencing Microarray
16.0 years ago Wolfgang Huber ★ 13k
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Job openings in Boston, MA, USA
Sequencing Microarray Cancer Sequencing Microarray Cancer
16.0 years ago Wittner, Ben ▴ 290
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
16.0 years ago Patrick Aboyoun ★ 1.6k
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Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing Genetics Classification Cancer PROcess Sequencing Genetics Classification
16.0 years ago Reek, J. ▴ 10
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workshops?
Sequencing Sequencing
updated 16.0 years ago by 6.7k • written 16.0 years ago by ▴ 30
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Job advertisement
Transcription Sequencing Microarray Normalization Pathways PROcess Transcription Sequencing
16.1 years ago Alexandre Kuhn ▴ 60
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BioC 2010 European Developers' meeting
Sequencing Cancer Sequencing Cancer
16.1 years ago Crispin Miller ★ 1.1k
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exon exon junction library for human
Sequencing Sequencing
updated 16.2 years ago by ★ 13k • written 16.2 years ago by ★ 1.0k
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Call for papers and participants on Next Generation Sequencing (CAMDA 2009)
Sequencing Sequencing
16.2 years ago Pan Du ★ 1.2k
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Statistics for next-generation sequencing transcriptomics
Sequencing SAGE Sequencing SAGE
updated 16.3 years ago by ▴ 10 • written 16.3 years ago by ★ 3.4k
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Fwd: edgeR with only 1 replicate?
Sequencing SAGE edgeR Sequencing SAGE edgeR
updated 16.3 years ago by ★ 6.0k • written 16.3 years ago by ★ 2.0k
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JOB: Cancer Research UK - Cambridge Research Institute Bioinformatics Core
Sequencing Microarray Cancer Sequencing Microarray Cancer
16.3 years ago Mark Dunning ★ 1.1k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
16.3 years ago Joern Toedling ▴ 450
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Call for participants of CAMDA2009
Sequencing Sequencing
16.5 years ago Pan Du ★ 1.2k
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Post Doc position, Berlin Germany
Sequencing Microarray Proteomics Pathways Network Cancer Sequencing Microarray Proteomics
16.5 years ago Paul Hammer ▴ 220
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Bioinformatics postdoc in Brussels
Sequencing Epigenetics Cancer Breast Sequencing Epigenetics Cancer Breast
16.6 years ago Vincent Detours ▴ 80
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other human genomes, other SNP sets?
Sequencing BSgenome SNPlocs BSgenome Sequencing BSgenome SNPlocs BSgenome
16.7 years ago Paul Shannon ★ 1.1k
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Advanced Course in Analysis of Short Read Sequencing Data
Sequencing Sequencing
16.7 years ago Wolfgang Huber ★ 13k
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R/BioC workshops in Southern California
Sequencing Clustering Sequencing Clustering
16.7 years ago Thomas Girke ★ 1.7k
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[JOB] National Cancer Institute, Bethesda, MD
Sequencing miRNA Microarray Genetics Cancer Sequencing miRNA Microarray Genetics Cancer
16.7 years ago Sean Davis 21k
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present/absent on 2-color oligo arrays
Sequencing Microarray Sequencing Microarray
updated 16.7 years ago by ★ 6.5k • written 16.7 years ago by ★ 6.0k
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present/absent on 2-color oligo arrays
Sequencing Sequencing
updated 16.7 years ago by ▴ 330 • written 16.7 years ago by ★ 6.0k
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BiomaRt and extracting genomic sequence
Sequencing biomaRt Sequencing biomaRt
updated 16.8 years ago by ▴ 600 • written 16.8 years ago by ▴ 10
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Job offer at EMBL Heidelberg
Sequencing Sequencing
updated 16.8 years ago by ▴ 20 • written 16.8 years ago by ★ 1.2k
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Reminder: Intermediate BioC Course 21-23 Jan 09
Sequencing Microarray genomes Sequencing Microarray genomes
16.8 years ago Patrick Aboyoun ★ 1.6k
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Course material for "Using Bioconductor for ChIP-seq experiments"
Sequencing Cancer BSgenome annotate Biostrings BSgenome Sequencing Cancer BSgenome
updated 16.9 years ago by ▴ 10 • written 16.9 years ago by ★ 1.6k
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Postdoctoral scientist/programmer positions
Sequencing Cancer Sequencing Cancer
17.0 years ago Crispin Miller ★ 1.1k
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BIOINFORMATICIAN position available in Italy
Sequencing Sequencing
17.0 years ago rcaloger ▴ 500
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
17.0 years ago Patrick Aboyoun ★ 1.6k
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Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ▴ 300
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R package to estimate aggregation of NGS reads
Sequencing Sequencing
updated 17.1 years ago by 25k • written 17.1 years ago by ▴ 340
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854
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Bioconductor and sequencing
Sequencing Cancer Sequencing Cancer
updated 17.1 years ago by ▴ 150 • written 17.1 years ago by ★ 5.5k
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New Bioconductor package: rtracklayer
Sequencing Annotation CGH GenomeGraphs rtracklayer Sequencing Annotation CGH GenomeGraphs
17.5 years ago Michael Lawrence ▴ 620
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Two Computational Biology / Bioinformatics Positions, University of Cambridge, UK
Sequencing Sequencing
17.5 years ago Krys Kelly ▴ 270
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Postdoctoral Research @ Cold Spring Harbor Laboratory
Sequencing Genetics Cancer Sequencing Genetics Cancer
17.6 years ago Matthew Vaughn ▴ 30
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bioc-sig-sequencing: new list for Bioconductor high-throughput sequencing analysis
Sequencing Sequencing
17.7 years ago Martin Morgan 25k
308 results • Page 6 of 7
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Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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