Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
significance
•
reset
1
vote
8
replies
3.9k
views
DESeq2: betaPrior changes significance dramatically
deseq2
betaPrior
shrinkage
significance
6.1 years ago
brynedal
▴ 40
1
vote
1
reply
1.5k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 6.7 years ago by
James W. MacDonald
66k • written 6.7 years ago by
skids121
• 0
3
votes
3
replies
1.0k
views
limma decideTests: only p-value less than (but not equal to) alpha are flagged as significant
limma
edger
significance
rnaseq
updated 7.3 years ago by
Gordon Smyth
51k • written 7.3 years ago by
roberto.spreafico
▴ 20
1
vote
4
replies
1.4k
views
comparing transcripts expression between conditions
salmon
transcripts
significance
counts
7.9 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
2.7k
views
Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2
wald
lrt
genes
significance
updated 8.0 years ago by
Michael Love
42k • written 8.0 years ago by
aziza
▴ 20
0
votes
0
replies
872
views
cell analysis- significance output perturbed in shiny environment
cellcode
significance
8.1 years ago
christopher.clarskon15
▴ 20
6 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Awards
• All
Popular Question
to
swbarnes2
★ 1.4k
Popular Question
to
Stephanie M. Gogarten
▴ 870
Popular Question
to
Jonathan
▴ 10
Popular Question
to
Frederico Moraes Ferreira
▴ 100
Popular Question
to
richardallenfriedmanbrooklyn
▴ 20
Locations
• All
Melbourne, Australia,
38 minutes ago
United Kingdom,
1 hour ago
The city by the bay,
1 hour ago
San Diego,
2 hours ago
WEHI, Melbourne, Australia,
3 hours ago
Traffic: 324 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6