Bioconductor Significance

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4.9k

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deseq2 betaPrior shrinkage significance

7.4 years ago brynedal ▴ 40

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2.4k

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dna methylation illimina 450k methylation beta M significance

updated 8.0 years ago by James W. MacDonald 68k • written 8.0 years ago by skids121 • 0

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1.4k

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limma edger significance rnaseq

updated 8.6 years ago by Gordon Smyth 53k • written 8.6 years ago by roberto.spreafico ▴ 20

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1.8k

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salmon transcripts significance counts

9.2 years ago Assa Yeroslaviz ★ 1.5k

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3.1k

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deseq2 wald lrt genes significance

updated 9.3 years ago by Michael Love 43k • written 9.3 years ago by aziza ▴ 20

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1.1k

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cellcode significance

9.4 years ago christopher.clarskon15 ▴ 20

6 results • Page 1 of 1

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Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k

Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…

Comment: Sharing a collection of datasets in ExperimentHub by Aaron Lun ★ 29k

FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…

Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k

Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…

Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

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Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

Answer: ordinary t from limma [was: How would I normally compare swirl?]

Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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