Showing : significance • reset
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DESeq2: betaPrior changes significance dramatically
deseq2 betaPrior shrinkage significance
7.5 years ago brynedal ▴ 40
1
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1
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2.4k
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 8.1 years ago by 68k • written 8.1 years ago by • 0
3
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3
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1.4k
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limma decideTests: only p-value less than (but not equal to) alpha are flagged as significant
limma edger significance rnaseq
updated 8.7 years ago by 53k • written 8.7 years ago by ▴ 20
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4
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1.8k
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comparing transcripts expression between conditions
salmon transcripts significance counts
9.3 years ago Assa Yeroslaviz ★ 1.5k
0
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3
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3.2k
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Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2 wald lrt genes significance
updated 9.4 years ago by 43k • written 9.4 years ago by ▴ 20
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0
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cell analysis- significance output perturbed in shiny environment
cellcode significance
9.5 years ago christopher.clarskon15 ▴ 20
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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