Showing : snapcgh • reset
2
votes
2
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1.7k
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snapCGH segmentation fault
snapcgh software error
updated 10.2 years ago by ▴ 70 • written 10.2 years ago by • 0
0
votes
0
replies
1.2k
views
Get data frame of CNV calls from Seglist object
seglist snapcgh dnacopy
10.5 years ago Cian Murphy ▴ 40
0
votes
1
reply
1.8k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 11.5 years ago by 21k • written 11.5 years ago by ★ 13k
0
votes
0
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1.6k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
12.5 years ago Guest User ★ 13k
0
votes
0
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1.1k
views
snapCGH and clonesinfo
CGH limma snapCGH CGH limma snapCGH
12.6 years ago Juliet Hannah ▴ 360
0
votes
0
replies
1.2k
views
problem with readPositionalInfo() for Nimblegen for ArrayCGH
snapCGH cghMCR snapCGH cghMCR
14.5 years ago Muksitul Haque ▴ 10
0
votes
1
reply
1.1k
views
snapCGH doesn't work: unable to load shared library ...
snapCGH snapCGH
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 20
0
votes
0
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1.4k
views
analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
15.1 years ago Adeolu Adewoye ▴ 40
0
votes
1
reply
2.0k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 110
0
votes
2
replies
1.9k
views
Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 15.8 years ago by ▴ 450 • written 15.8 years ago by ▴ 80
0
votes
5
replies
2.5k
views
snapCGH, runBioHMM, Error: segfault from C stack overflow
snapCGH snapCGH
updated 15.9 years ago by ▴ 150 • written 15.9 years ago by ▴ 100
0
votes
2
replies
1.4k
views
snapCGH package not loaded
snapCGH snapCGH
updated 16.0 years ago by ▴ 20 • written 16.0 years ago by ▴ 500
0
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0
replies
1.5k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
16.0 years ago Daniel Rico ▴ 110
0
votes
0
replies
1.0k
views
snapCGH - could not find function "readPositionalInfo"
GUI snapCGH GUI snapCGH
16.3 years ago Kristian Almstrup ▴ 10
0
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0
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1.2k
views
snapCGH and processCGH
snapCGH snapCGH
16.3 years ago lakshmi dhevi ▴ 10
0
votes
0
replies
1.3k
views
problems with snapCGH readPositionalInfo processCGH
CGH snapCGH CGH snapCGH
16.4 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
1.4k
views
general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
16.4 years ago Wolfgang RAFFELSBERGER ▴ 140
0
votes
0
replies
922
views
snapCGH plotting
GO graph snapCGH GO graph snapCGH
16.5 years ago Boris Umylny ▴ 120
0
votes
4
replies
2.0k
views
snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 16.7 years ago by ▴ 160 • written 16.7 years ago by ★ 1.1k
0
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0
replies
997
views
error in runBioHMM() (package snapCGH)
CGH snapCGH CGH snapCGH
16.7 years ago Wolfgang Raffelsberger ▴ 160
0
votes
1
reply
1.3k
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 17.3 years ago by ▴ 340 • written 17.3 years ago by ▴ 340
0
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4
replies
1.6k
views
snapCGH_error in plotting segmentation
snapCGH snapCGH
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 340
0
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0
replies
1.1k
views
snapCGH and Nimblegen arrays
Cancer snapCGH Cancer snapCGH
17.7 years ago Gareth Wilson ▴ 10
0
votes
0
replies
1.1k
views
problem with analyzing human 244k agilent array with snapCGH
Annotation Cancer snapCGH Annotation Cancer snapCGH
17.8 years ago Sean Davis 21k
0
votes
8
replies
2.8k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
18.3 years ago jhs1jjm@leeds.ac.uk ▴ 230
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4
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2.0k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 18.3 years ago by ▴ 230 • written 18.3 years ago by ▴ 110
0
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2
replies
1.6k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 18.3 years ago by ▴ 40 • written 18.3 years ago by ▴ 110
0
votes
7
replies
2.2k
views
processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 230
0
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7
replies
2.5k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 18.4 years ago by ▴ 250 • written 18.4 years ago by ▴ 440
0
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0
replies
890
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
18.4 years ago Lyudmila Mikhaylova ▴ 20
0
votes
0
replies
1.2k
views
Converting Seglist to segments file
Cancer convert DNAcopy snapCGH cghMCR Cancer convert DNAcopy snapCGH cghMCR
18.6 years ago Daniel Brewer ★ 1.9k
0
votes
1
reply
1.6k
views
CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 18.6 years ago by ▴ 70 • written 18.6 years ago by ★ 1.9k
0
votes
0
replies
975
views
aCGH package analysis - duplicate spot averaging problem
aCGH aCGH snapCGH aCGH aCGH snapCGH
18.6 years ago Ian Roberts ▴ 70
0
votes
2
replies
1.4k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
18.6 years ago Ian Roberts ▴ 70
0
votes
2
replies
1.3k
views
snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 18.8 years ago by 21k • written 18.8 years ago by ▴ 90
0
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3
replies
1.7k
views
snapCGH: T instead of TRUE, etc
Cancer snapCGH Cancer snapCGH
18.9 years ago Ramon Diaz ★ 1.1k
0
votes
4
replies
1.3k
views
CGH HomHMM problem and how to debug
Cancer snapCGH Cancer snapCGH
18.9 years ago Daniel Brewer ★ 1.9k
0
votes
1
reply
1.3k
views
SnapCGH problem
Cancer snapCGH Cancer snapCGH
19.0 years ago Daniel Brewer ★ 1.9k
0
votes
1
reply
1.5k
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 19.3 years ago by ▴ 310 • written 19.3 years ago by ▴ 30
0
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2
replies
2.4k
views
FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer Breast PROcess tilingArray snapCGH Cancer Breast PROcess tilingArray snapCGH
updated 19.4 years ago by ★ 13k • written 19.4 years ago by ▴ 310
40 results • Page 1 of 1
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Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0
Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…
Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
Aaron Lun was a PhD student in my Lab back in 2015, when he posted the answers about allele-specific expression that you and Mike Love have…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
You just need the mouse identifier (controls baseline) and the group specific allelic effect.
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Julia Broadbent • 0
Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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