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snpStats
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0
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4
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1.5k
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snpStats, read.long, alleles in two columns
SNP
Genetics
snpStats
SNP
Genetics
snpStats
updated 12.2 years ago by
David Clayton
▴ 20 • written 12.2 years ago by
Liz Hare
▴ 30
1
vote
2
replies
1.8k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats
BioConductor
LD
Linkage Disequilibrium
NA
9.2 years ago
remi.tournebize
▴ 10
0
votes
3
replies
1.7k
views
Error reading imputed file using snpStats package
SNP
snpStats
SNP
snpStats
updated 10.3 years ago by
Vincent J. Carey, Jr.
6.7k • written 10.3 years ago by
francesca casalino
▴ 50
0
votes
1
reply
1.4k
views
col.summary error in snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
updated 11.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.1 years ago by
Tereza Jezkova - personal
▴ 10
0
votes
2
replies
1.4k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats
snpStats
updated 12.6 years ago by
Martin Morgan
25k • written 12.6 years ago by
Tim Triche
★ 4.2k
0
votes
3
replies
2.8k
views
GWAS with Affymetrix SNP 6.0
SNP
oligo
snpMatrix
snpStats
SNP
oligo
snpMatrix
snpStats
updated 11.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.9 years ago by
David Hervás
▴ 20
0
votes
1
reply
1.3k
views
snpStats --- MAF in Pedigrees
snpStats
snpStats
updated 11.3 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.3 years ago by
Samuel Younkin
▴ 60
0
votes
3
replies
1.1k
views
SNPstats package bug report
snpStats
snpStats
10.4 years ago
Guest User
★ 13k
0
votes
1
reply
1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression
Survival
snpStats
Regression
Survival
snpStats
10.4 years ago
David Winsemius
▴ 40
0
votes
1
reply
1.6k
views
snpStats reference allele used in genetic associations?
SNP
Category
snpStats
SNP
Category
snpStats
updated 9.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 9.9 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
snp analysis GWAS
snpstats
updated 9.4 years ago by
Steve Lianoglou
★ 13k • written 9.4 years ago by
ahmadamareen1985
• 0
1
vote
1
reply
1.6k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation
DataFrame
snpstats
8.5 years ago
TimothéeFlutre
▴ 80
0
votes
0
replies
606
views
Coercion of a numeric matrix into a SnpMatrix
snpStats
4.2 years ago
schandry
• 0
0
votes
0
replies
1.0k
views
Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
9.5 years ago
vickygarfield87
• 0
0
votes
0
replies
1.7k
views
(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error
snpStats
9.5 years ago
vickygarfield87
• 0
0
votes
0
replies
729
views
Extract flanking sequences SNP without reference genome
SNPData
snpStats
SNP
flankingsequences
3.1 years ago
Amber
• 0
0
votes
0
replies
1.0k
views
statistics from snpStats objects
SNP
snpStats
SNP
snpStats
11.9 years ago
james power
▴ 10
1
vote
0
replies
1.0k
views
Error when computing ld with snpStats in big samples
software error
snpstats
`ld
7.9 years ago
carlos.ruiz
• 0
1
vote
2
replies
1.3k
views
Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld()
snpStats
2.4 years ago
Anastasiia
• 0
0
votes
0
replies
1.0k
views
snp.rhs.estimates and/or .tests and extracting results
snpStats
additive model
7.1 years ago
natalie.jean.mcdonald
• 0
0
votes
0
replies
1.8k
views
snpStats/GWASTools conversion
cdf
convert
snpMatrix
snpStats
GWASTools
cdf
convert
snpMatrix
snpStats
GWASTools
10.6 years ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
1.2k
views
reading ped error when using the snpStats library
snpstats
ped file
R
6.5 years ago
kzelaya2
▴ 10
0
votes
0
replies
2.0k
views
Plink Data for Fst Calculations
snpStats
snpStats
10.4 years ago
Voke AO
▴ 760
0
votes
1
reply
930
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
5.8 years ago
GENOMIC_region
• 0
0
votes
0
replies
1.1k
views
snpStats Fst Implementation
snpStats
snpStats
10.6 years ago
Voke AO
▴ 760
25 results • Page
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Answer: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
James W. MacDonald
65k
You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…
Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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