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Showing :
snpmatrix
•
reset
0
votes
0
replies
798
views
Parsing through snp matrix
snpmatrix
GGI
6.7 years ago
GENOMIC_region
• 0
0
votes
0
replies
686
views
Error in snpStats::read.pedfile: GeneGeneInter
snpmatrix
ped
7.9 years ago
GENOMIC_region
• 0
0
votes
0
replies
2.2k
views
snpStats/GWASTools conversion
cdf
convert
snpMatrix
snpStats
GWASTools
cdf
convert
snpMatrix
snpStats
GWASTools
12.2 years ago
Stephanie M. Gogarten
▴ 890
0
votes
5
replies
4.4k
views
how to convert genotype snp matrix to nucleotide genotypes?
SNP
convert
snpMatrix
SNP
convert
snpMatrix
updated 12.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.6 years ago by
Tereza Jezkova UNLV
▴ 20
0
votes
1
reply
1.7k
views
col.summary error in snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
updated 12.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.7 years ago by
Tereza Jezkova - personal
▴ 10
0
votes
6
replies
6.9k
views
Calculate heterozygosity % using SNP genotype data
SNP
snpMatrix
SNP
snpMatrix
updated 13.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.4 years ago by
gowtham
▴ 210
0
votes
3
replies
3.5k
views
GWAS with Affymetrix SNP 6.0
SNP
oligo
snpMatrix
snpStats
SNP
oligo
snpMatrix
snpStats
updated 13.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.5 years ago by
David Hervás
▴ 20
0
votes
1
reply
1.8k
views
convert GGtools object (generated by vcf2sm) to snpMatrix class or other class
SNP
convert
GGtools
snpMatrix
SNP
convert
GGtools
snpMatrix
updated 14.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.5 years ago by
Mao Jianfeng
▴ 290
0
votes
1
reply
1.4k
views
Problems Reading SNPs into snpMatrix
SNP
snpMatrix
SNP
snpMatrix
updated 14.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.6 years ago by
Chris K. Fuller
▴ 10
0
votes
1
reply
1.1k
views
crlmm and snpMatrix
snpMatrix
crlmm
snpMatrix
crlmm
updated 15.5 years ago by
Benilton Carvalho
★ 4.3k • written 15.5 years ago by
Tim Rayner
▴ 270
0
votes
0
replies
1.1k
views
major alterations to GGdata/GGtools planned
SNP
snpMatrix
cycle
SNP
snpMatrix
cycle
17.7 years ago
Vincent J. Carey, Jr.
6.7k
11 results • Page
1 of 1
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Petr
• 0
The review highlights Play Regal's commitment to fast, secure withdrawals, ensuring players receive their profits quickly and reliably. Fin…
Comment: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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