Bioconductor Snpmatrix

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snpmatrix GGI

6.8 years ago GENOMIC_region • 0

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706

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snpmatrix ped

8.1 years ago GENOMIC_region • 0

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cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools

12.3 years ago Stephanie M. Gogarten ▴ 890

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SNP convert snpMatrix SNP convert snpMatrix

updated 12.7 years ago by Vincent J. Carey, Jr. 6.7k • written 12.7 years ago by Tereza Jezkova UNLV ▴ 20

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SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats

updated 12.9 years ago by Vincent J. Carey, Jr. 6.7k • written 12.9 years ago by Tereza Jezkova - personal ▴ 10

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7.0k

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SNP snpMatrix SNP snpMatrix

updated 13.5 years ago by Vincent J. Carey, Jr. 6.7k • written 13.5 years ago by gowtham ▴ 210

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3.6k

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SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats

updated 13.6 years ago by Vincent J. Carey, Jr. 6.7k • written 13.6 years ago by David Hervás ▴ 20

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1.9k

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SNP convert GGtools snpMatrix SNP convert GGtools snpMatrix

updated 14.6 years ago by Vincent J. Carey, Jr. 6.7k • written 14.6 years ago by Mao Jianfeng ▴ 290

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SNP snpMatrix SNP snpMatrix

updated 14.7 years ago by Vincent J. Carey, Jr. 6.7k • written 14.7 years ago by Chris K. Fuller ▴ 10

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snpMatrix crlmm snpMatrix crlmm

updated 15.6 years ago by Benilton Carvalho ★ 4.3k • written 15.6 years ago by Tim Rayner ▴ 270

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SNP snpMatrix cycle SNP snpMatrix cycle

17.8 years ago Vincent J. Carey, Jr. 6.7k

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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k

Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …

Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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