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starr
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1.1k
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how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
8.8 years ago
sudhirjadhao2009
• 0
0
votes
4
replies
1.6k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
10.5 years ago
ashubiochem
• 0
0
votes
1
reply
1.9k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
10.6 years ago
bruce.moran
▴ 30
0
votes
1
reply
1.4k
views
Starr package: cmarrt.ma error
Starr
Starr
updated 11.8 years ago by
Julie Zhu
★ 4.3k • written 11.8 years ago by
Paul
▴ 10
0
votes
0
replies
1.2k
views
Starr package: cmarrt.ma error
Starr
Starr
11.9 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.5k
views
readCelFile function in Starr is crashing R
Starr
Starr
updated 14.2 years ago by
Kasper Daniel Hansen
★ 6.5k • written 14.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
help with Starr
GO
Starr
GO
Starr
updated 14.7 years ago by
Martin Morgan
25k • written 14.7 years ago by
Yongde Bao
▴ 170
0
votes
4
replies
1.8k
views
Reading GFF using Starr
Starr
Starr
updated 14.9 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 14.9 years ago by
Feseha Abebe-Akele
▴ 30
0
votes
1
reply
1.9k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
15.4 years ago
Noah Dowell
▴ 410
0
votes
3
replies
2.0k
views
ChIP-chip sequence bias not removed
Normalization
vsn
Starr
Normalization
vsn
Starr
updated 15.5 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 15.5 years ago by
Edwin Groot
▴ 230
0
votes
6
replies
2.2k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 15.7 years ago by
Julie Zhu
★ 4.3k • written 15.7 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.2k
views
Starr - MAT normalization
Normalization
Starr
Normalization
Starr
updated 15.8 years ago by
Raphael Gottardo
▴ 40 • written 15.8 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
1.2k
views
Ringo/Starr getProfiles function
Annotation
Starr
Annotation
Starr
updated 16.2 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 16.2 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.2k
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 16.2 years ago by
Wolfgang Huber
★ 13k • written 16.2 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.1k
views
Please Help with Starr Package
Normalization
Starr
Normalization
Starr
updated 16.2 years ago by
Martin Morgan
25k • written 16.2 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.6k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 16.2 years ago by
Tobias Straub
▴ 430 • written 16.2 years ago by
Noah Dowell
▴ 410
16 results • Page
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Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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