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starr
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how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
8.4 years ago
sudhirjadhao2009
• 0
0
votes
4
replies
1.5k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
10.1 years ago
ashubiochem
• 0
0
votes
1
reply
1.8k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
10.2 years ago
bruce.moran
▴ 30
0
votes
1
reply
1.3k
views
Starr package: cmarrt.ma error
Starr
Starr
updated 11.5 years ago by
Julie Zhu
★ 4.3k • written 11.5 years ago by
Paul
▴ 10
0
votes
0
replies
1.1k
views
Starr package: cmarrt.ma error
Starr
Starr
11.5 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.4k
views
readCelFile function in Starr is crashing R
Starr
Starr
updated 13.9 years ago by
Kasper Daniel Hansen
★ 6.5k • written 13.9 years ago by
Guest User
★ 13k
0
votes
1
reply
1.0k
views
help with Starr
GO
Starr
GO
Starr
updated 14.3 years ago by
Martin Morgan
25k • written 14.3 years ago by
Yongde Bao
▴ 170
0
votes
4
replies
1.6k
views
Reading GFF using Starr
Starr
Starr
updated 14.5 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 14.6 years ago by
Feseha Abebe-Akele
▴ 30
0
votes
1
reply
1.8k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
15.0 years ago
Noah Dowell
▴ 410
0
votes
3
replies
1.9k
views
ChIP-chip sequence bias not removed
Normalization
vsn
Starr
Normalization
vsn
Starr
updated 15.2 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 15.2 years ago by
Edwin Groot
▴ 230
0
votes
6
replies
2.1k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 15.3 years ago by
Julie Zhu
★ 4.3k • written 15.3 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.1k
views
Starr - MAT normalization
Normalization
Starr
Normalization
Starr
updated 15.4 years ago by
Raphael Gottardo
▴ 40 • written 15.4 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
1.2k
views
Ringo/Starr getProfiles function
Annotation
Starr
Annotation
Starr
updated 15.8 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 15.8 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.2k
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.0k
views
Please Help with Starr Package
Normalization
Starr
Normalization
Starr
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.5k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 15.9 years ago by
Tobias Straub
▴ 430 • written 15.9 years ago by
Noah Dowell
▴ 410
16 results • Page
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Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Comment: GO.db and others package Download failure
by
Skyler
• 0
Hi James, Below I have inserted all of my code. I have run r as an administrator and not as an administrator. I have changed my CRANmirror …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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