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starr
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how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
8.4 years ago
sudhirjadhao2009
• 0
0
votes
4
replies
1.5k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
10.2 years ago • updated 10.1 years ago
ashubiochem
• 0
0
votes
1
reply
1.8k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
10.3 years ago
bruce.moran
▴ 30
0
votes
1
reply
1.3k
views
Starr package: cmarrt.ma error
Starr
Starr
updated 11.5 years ago by
Julie Zhu
★ 4.3k • written 11.5 years ago by
Paul
▴ 10
0
votes
0
replies
1.1k
views
Starr package: cmarrt.ma error
Starr
Starr
11.5 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.4k
views
readCelFile function in Starr is crashing R
Starr
Starr
updated 13.9 years ago by
Kasper Daniel Hansen
★ 6.5k • written 13.9 years ago by
Guest User
★ 13k
0
votes
1
reply
1.0k
views
help with Starr
GO
Starr
GO
Starr
updated 14.4 years ago by
Martin Morgan
25k • written 14.4 years ago by
Yongde Bao
▴ 170
0
votes
4
replies
1.6k
views
Reading GFF using Starr
Starr
Starr
updated 14.6 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 14.6 years ago by
Feseha Abebe-Akele
▴ 30
0
votes
1
reply
1.8k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
15.1 years ago
Noah Dowell
▴ 410
0
votes
3
replies
1.9k
views
ChIP-chip sequence bias not removed
Normalization
vsn
Starr
Normalization
vsn
Starr
updated 15.2 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 15.2 years ago by
Edwin Groot
▴ 230
0
votes
6
replies
2.1k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 15.3 years ago by
Julie Zhu
★ 4.3k • written 15.3 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.1k
views
Starr - MAT normalization
Normalization
Starr
Normalization
Starr
updated 15.4 years ago by
Raphael Gottardo
▴ 40 • written 15.4 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
1.2k
views
Ringo/Starr getProfiles function
Annotation
Starr
Annotation
Starr
updated 15.8 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 15.8 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.2k
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.0k
views
Please Help with Starr Package
Normalization
Starr
Normalization
Starr
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.5k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 15.9 years ago by
Tobias Straub
▴ 430 • written 15.9 years ago by
Noah Dowell
▴ 410
16 results • Page
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Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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