Bioconductor Starr

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starr chip-chip

8.6 years ago sudhirjadhao2009 • 0

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limma ringo starr

10.3 years ago ashubiochem • 0

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Ringo affy tilingarray plot starr

10.4 years ago bruce.moran ▴ 30

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Starr Starr

updated 11.7 years ago by Julie Zhu ★ 4.3k • written 11.7 years ago by Paul ▴ 10

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Starr Starr

11.7 years ago Julie Zhu ★ 4.3k

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Starr Starr

updated 14.1 years ago by Kasper Daniel Hansen ★ 6.5k • written 14.1 years ago by Guest User ★ 13k

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GO Starr GO Starr

updated 14.5 years ago by Martin Morgan 25k • written 14.5 years ago by Yongde Bao ▴ 170

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Starr Starr

updated 14.8 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 14.8 years ago by Feseha Abebe-Akele ▴ 30

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GO Yeast tilingArray Starr GO Yeast tilingArray Starr

15.3 years ago Noah Dowell ▴ 410

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Normalization vsn Starr Normalization vsn Starr

updated 15.4 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 15.4 years ago by Edwin Groot ▴ 230

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Yeast ChIPpeakAnno Starr Yeast ChIPpeakAnno Starr

updated 15.5 years ago by Julie Zhu ★ 4.3k • written 15.5 years ago by Noah Dowell ▴ 410

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Normalization Starr Normalization Starr

updated 15.6 years ago by Raphael Gottardo ▴ 40 • written 15.6 years ago by Hans-Ulrich Klein ▴ 330

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Annotation Starr Annotation Starr

updated 16.0 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 16.0 years ago by Noah Dowell ▴ 410

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biomaRt Ringo Starr biomaRt Ringo Starr

updated 16.0 years ago by Wolfgang Huber ★ 13k • written 16.0 years ago by Noah Dowell ▴ 410

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Normalization Starr Normalization Starr

updated 16.0 years ago by Martin Morgan 25k • written 16.0 years ago by Noah Dowell ▴ 410

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Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr

updated 16.1 years ago by Tobias Straub ▴ 430 • written 16.1 years ago by Noah Dowell ▴ 410

16 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k