Bioconductor Subjunc

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subjunc data.frame myExons Rsubread

updated 17 months ago by ATpoint ★ 4.6k • written 17 months ago by Sukeerthi • 0

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subjunc edgeR

2.9 years ago Assa Yeroslaviz ★ 1.5k

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SubRead Align Subjunc

updated 4.4 years ago by James W. MacDonald 67k • written 4.4 years ago by abano • 0

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1.6k

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rsubread subjunc

updated 9.3 years ago by Wei Shi ★ 3.6k • written 9.3 years ago by Stephen Piccolo ▴ 600

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1.4k

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rsubread subjunc rnaseq fusion genes

updated 9.4 years ago by Wei Shi ★ 3.6k • written 9.4 years ago by misic • 0

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seqc rsubread featurecounts subjunc ercc News

10.0 years ago Wei Shi ★ 3.6k

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1.4k

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rnaseq subjunc indel

updated 10.1 years ago by Wei Shi ★ 3.6k • written 10.1 years ago by daniel.silvestre ▴ 100

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

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Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to Ou, Jianhong ★ 1.3k