Bioconductor Tcga

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2.9k

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illimina 450k methylation qsea MEDIPS TCGA

updated 3 months ago by Matthias Lienhard ▴ 240 • written 7.1 years ago by justinburgener ▴ 20

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524

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recount3 TCGA RNASeq

updated 5 months ago by Leonardo Collado Torres ★ 1.0k • written 6 months ago by tangming2005 ▴ 190

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1.0k

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DESeq2 recount GTEx TCGA recount3

updated 11 months ago by ATpoint ★ 4.0k • written 11 months ago by David ▴ 20

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489

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BatchEffect TCGA WGCNA

updated 10 months ago by ATpoint ★ 4.0k • written 10 months ago by khaserdene99 • 0

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499

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TCGA GenomicDataCommons GDC

written 10 months ago by António Miguel de Jesus Domingues ▴ 490

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158

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TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data

8 weeks ago BioinfoMug • 0

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216

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TCGAbiolinks TCGA clinical TCGA-BRCA

written 6 weeks ago by BioinfoMug • 0

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GDCRNATools TCGA

1 day ago glaciya2018 • 0

8 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

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Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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