Bioconductor Technical replicates

Showing : technical replicates • reset

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3.0k

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ballgown biologicalreplicates technical replicates stringtie

updated 7.3 years ago by Alyssa Frazee ▴ 210 • written 8.0 years ago by linda.boshans • 0

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4.1k

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limma technical replicates

9.3 years ago Eleni Christodoulou ▴ 150

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technical replicates

9.8 years ago sara.pegolo • 0

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6.9k

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limma duplicateCorrelation rna-seq technical replicates biological replicates

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by paul.alto ▴ 50

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6.7k

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rnaseq edger technical replicates

updated 7.7 years ago by Ryan C. Thompson ★ 7.9k • written 7.7 years ago by alakatos ▴ 130

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1.9k

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limma technical replicates biological replicates paired analysis

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by paul.alto ▴ 50

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1.4k

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DRIMSeq R DTU technical replicates deseq2

updated 4.7 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by poecile.pal • 0

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3.6k

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limma covariate block paired samples technical replicates

updated 9.3 years ago by Aaron Lun ★ 28k • written 9.3 years ago by eleonoregravier ▴ 70

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2.8k

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illumina human ht-12 v4 technical replicates

updated 9.2 years ago by Gordon Smyth 52k • written 9.2 years ago by Eleni Christodoulou ▴ 150

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5.0k

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limma microarray duplicatecorrelation technical replicates linear model

updated 9.2 years ago by Aaron Lun ★ 28k • written 9.2 years ago by Eleni Christodoulou ▴ 150

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1.6k

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rnaseq ruvnormalize normalization technical replicates

9.3 years ago thomas.wolfe • 0

11 results • Page 1 of 1

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Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by earntodiesaz • 0

I'm delighted to have the chance to engage in conversation with your blog; I'm looking forward to reading more posts that can be relied upo…

Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana by earntodiesaz • 0

To be honest with you, I must say that it was an exceptionally good post. Writing it down and reading it during my lunch break was a very e…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k

I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10

Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…

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Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using TPM from tximport of Salmon output for singscore

Comment: Using TPM from tximport of Salmon output for singscore

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