Showing : time-series • reset
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Time-series analysis with DESeq2
deseq2 time-series design matrix edger
updated 5.2 years ago by 41k • written 5.2 years ago by ★ 1.5k
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5
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1.8k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
4.8 years ago mah19 • 0
1
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5
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1.5k
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Time course DE analysis in DESeq2 with Wald test
DESeq2 time-series
updated 6.5 years ago by 41k • written 6.5 years ago by ▴ 10
1
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4
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1.3k
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Analysis Time course data using DESeq2
deseq2 timecourse multiple time points time-series
updated 5.8 years ago by 41k • written 5.8 years ago by • 0
0
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3
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1.0k
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 5.8 years ago by 41k • written 5.8 years ago by • 0
1
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6
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894
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Time-series RNA-seq analysis using DESeq2
time-series DESeq2 RNASeq timecoursedata TimeCourse
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
0
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1
reply
816
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DEseq2 to test half-life for time-series data
half-life DESeq2 time-series
updated 3.0 years ago by 41k • written 3.0 years ago by ▴ 10
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2
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779
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R: problem with running time-series analysis software: Mfuzz
time-series mfuzz replace=FALSE
23 months ago soda ▴ 80
0
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1
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611
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Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2 time-series timecoursedata timecourse multifactorial
updated 17 months ago by 41k • written 18 months ago by • 0
9 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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