Bioconductor Timecoursedata

Showing : timecoursedata • reset

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1.3k

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timecoursedata limma

7 months ago • updated 4 months ago triZZla • 0

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893

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Debebe • 0

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494

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timecoursedata RNASeqData TimeCourse DESeq2

updated 9 months ago by Michael Love 41k • written 9 months ago by georgii.vdovin • 0

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474

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timecoursedata edgeR

updated 13 months ago by Gordon Smyth 50k • written 13 months ago by boczniak767 ▴ 720

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630

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DESeq2 timecoursedata replicates

updated 14 months ago by Michael Love 41k • written 14 months ago by fepesanz8 • 0

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610

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 17 months ago by Michael Love 41k • written 18 months ago by arshad1292 • 0

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954

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QTL fourier TimeSeriesExperiment timecoursedata

3.0 years ago Daphne • 0

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1.4k

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limma proteomics TMTlabeling timecoursedata

updated 3.5 years ago by SamGG ▴ 350 • written 3.5 years ago by maleknias • 0

8 results • Page 1 of 1

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Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to Michael Love 41k

Scholar to James W. MacDonald 65k

Supporter to JKim • 0