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trackviewer
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0
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2
replies
1.7k
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trackViewer bigWig smoothing
trackViewer
2.5 years ago
liruiradiant
• 0
1
vote
8
replies
1.6k
views
trackViewer, the interactive version, can't view negative values in bigWig
trackViewer
updated 4.8 years ago by
Ou, Jianhong
★ 1.3k • written 4.8 years ago by
liruiradiant
• 0
1
vote
3
replies
1.2k
views
trackViewer peak visualization
trackViewer
2.5 years ago
liruiradiant
• 0
1
vote
3
replies
1.0k
views
trackViewer: how to make lolliplots for methylation data
trackViewer
methylation
lolliplot
4.5 years ago
patriciasolesanchez
• 0
0
votes
1
reply
980
views
trackviewer lolliplot pie.stack
lolliplot
trackviewer
updated 6.9 years ago by
Ou, Jianhong
★ 1.3k • written 6.9 years ago by
manuel.x.duval
• 0
0
votes
2
replies
970
views
trackViewer font
trackViewer
2.5 years ago
liruiradiant
• 0
0
votes
1
reply
964
views
Attempts to create a lolliplot from 1000 genomes .popvcf file using trackViewer generating the error, "Error: all(width(SNP.gr[[i]]) == 1) is not TRU…
bioconductor
R
trackviewer
updated 6.4 years ago by
Ou, Jianhong
★ 1.3k • written 6.4 years ago by
rop.jesse
• 0
3
votes
3
replies
908
views
trackViewer assigning track colors
trackViewer
track
updated 2.2 years ago by
Ou, Jianhong
★ 1.3k • written 2.2 years ago by
tomas.rodriguez
▴ 10
4
votes
3
replies
882
views
trackviewer gi2track not found
trackv
trackViewer
2.3 years ago
tomas.rodriguez
▴ 10
0
votes
3
replies
808
views
TrackViewer Vignette Err: attr must be a slot name of xscale object
trackViewer
4.4 years ago
liruiradiant
• 0
0
votes
3
replies
770
views
trackViewer: File format detection
trackViewer
trackview
updated 3.4 years ago by
Ou, Jianhong
★ 1.3k • written 3.4 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
633
views
Can I use trackViewer to generate methylation lolliops with my own gene models and assembly?
trackViewer
updated 4.5 years ago by
Ou, Jianhong
★ 1.3k • written 4.5 years ago by
martinson.john
• 0
0
votes
0
replies
469
views
How to use xscale
trackViewer
2.0 years ago
tomas.rodriguez
▴ 10
0
votes
1
reply
282
views
Incorrect display of Y-axis
trackViewer
updated 5 months ago by
Ou, Jianhong
★ 1.3k • written 5 months ago by
Bastien
• 0
14 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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