Showing : variancePartition • reset
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Testing Differential Expression with Interaction Effect Between Categorical and Continuous Variable with Repeated (Paired) Measures using variancePar…
limma variancePartition
7 months ago GJ • 0
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2
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805
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sva: get a sv for RIN scores
limma sva variancePartition voom RNASeq
updated 9 months ago by 52k • written 9 months ago by ▴ 10
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Differential Expression Genes as Independent Variables
limma DifferentialExpression variancePartition dream
updated 9 months ago by 68k • written 9 months ago by • 0
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makeContrastsDream for Interaction
limma DifferentialExpression variancePartition dream
10 months ago • updated 9 months ago abadgerw • 0
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1.1k
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Merge Replicates vs Mixed Model
limma DifferentialExpression variancePartition dream
10 months ago • updated 9 months ago abadgerw • 0
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Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multiple Tissues and Patients
edgeR variancePartition
updated 12 months ago by 52k • written 12 months ago by • 0
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867
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significant difference of p-values with dream() after updating VariancePartition
variancePartition
16 months ago Le • 0
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2.2k
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BiocParallel serialization errors on Windows
variancePartition BiocParallel
21 months ago hayleyw • 0
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1.7k
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DuplicateCorrelation() block by duplicate sample or by cell line ?
variancePartition RNASeqData limma BulkRNAseq RNASeq
updated 21 months ago by 52k • written 23 months ago by • 0
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How long does it usually take to complete dream() from start to finish?
variancePartition mixedmodel dream
2.0 years ago hayleyw • 0
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2.8k
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How many parameters should be included in the model design for deseq2?
DESeq2 variancePartition
2.4 years ago Weiqian ▴ 10
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1.3k
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Repeated Measures-Cross Over Study for RNAseq data using variancePartition::dream
RNAseq variancePartition edgeR dream
2.5 years ago DH • 0
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5
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1.7k
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Semi-technical replicates and voom sample weights
variancePa variancePartition limma-voom dream
updated 2.5 years ago by 52k • written 2.5 years ago by • 0
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770
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Argument is of length zero in variancePartition/Dream
expression variancePartition edgeR
3.1 years ago Jonathan • 0
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1.8k
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Repeated measures RNAseq analysis (edgeR or limma-voom)
edgeR limma variancePartition
updated 4.1 years ago by 52k • written 4.1 years ago by • 0
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1.8k
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limma - contrast matrix hypothesis testing
limma variancePartition
updated 4.2 years ago by 52k • written 4.2 years ago by ▴ 30
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1.2k
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What are cov.coefficients and cov.coefficients.list returned by dream()?
variancePartition limma
4.4 years ago Junghoon ▴ 10
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1.6k
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Error while running variancePartition::dream()
variancePartition limma BiocParallel
4.4 years ago Junghoon ▴ 10
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1.5k
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Excessive memory requirement of variancePartition::dream()
BiocParallel limma variancePartition
4.4 years ago • updated 4.2 years ago Junghoon ▴ 10
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dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream variancePartition limma differential expression repeated measures
updated 5.9 years ago by 52k • written 5.9 years ago by ▴ 20
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Results from variancePartition not matching those from lme4
variancepartition lme4 mixedmodel
updated 5.9 years ago by ▴ 170 • written 6.0 years ago by • 0
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3
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Blocking factor in limma/voom vs. variancePartition/dream analysis.
limma voom variancePartition dream
updated 5.9 years ago by ▴ 170 • written 6.2 years ago by ▴ 50
22 results • Page 1 of 1
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Answer: voomLmFit fitted log-CPM values by Gordon Smyth 52k
Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```
Comment: EuroBioC2024 abstract submission is open! by Finnianfly • 0
What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…
Comment: Length of 'dimnames' [1] not equal to array extent by Francesco Silvestro • 0
Resolved the error message!
Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
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Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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