Bioconductor VariancePartition

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743

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edgeR variancePartition

updated 10 weeks ago by Gordon Smyth 51k • written 10 weeks ago by Seymoo • 0

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500

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variancePartition

6 months ago Le • 0

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1.3k

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variancePartition BiocParallel

11 months ago • updated 10 months ago hayleyw • 0

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1.2k

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variancePartition RNASeqData limma BulkRNAseq RNASeq

updated 11 months ago by Gordon Smyth 51k • written 13 months ago by Gimena • 0

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1.3k

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variancePartition mixedmodel dream

14 months ago hayleyw • 0

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2.0k

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DESeq2 variancePartition

19 months ago • updated 18 months ago Weiqian ▴ 10

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946

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RNAseq variancePartition edgeR dream

20 months ago DH • 0

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1.3k

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variancePa variancePartition limma-voom dream

updated 20 months ago by Gordon Smyth 51k • written 20 months ago by Le • 0

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577

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expression variancePartition edgeR

2.2 years ago Jonathan • 0

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1.5k

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edgeR limma variancePartition

updated 3.3 years ago by Gordon Smyth 51k • written 3.3 years ago by jackgisby • 0

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1.5k

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limma variancePartition

updated 3.4 years ago by Gordon Smyth 51k • written 3.4 years ago by jarod ▴ 30

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972

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variancePartition limma

3.5 years ago Junghoon ▴ 10

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1.3k

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variancePartition limma BiocParallel

3.5 years ago Junghoon ▴ 10

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1.3k

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BiocParallel limma variancePartition

3.5 years ago • updated 3.4 years ago Junghoon ▴ 10

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2.9k

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dream variancePartition limma differential expression repeated measures

updated 5.1 years ago by Gordon Smyth 51k • written 5.1 years ago by hermidalc ▴ 20

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1.9k

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variancepartition lme4 mixedmodel

updated 5.1 years ago by gabriel.hoffman ▴ 160 • written 5.2 years ago by c.taylor • 0

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2.2k

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limma voom variancePartition dream

updated 5.1 years ago by gabriel.hoffman ▴ 160 • written 5.4 years ago by Ben ▴ 50

17 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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