Bioconductor VariancePartition

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variancepartition lme4 mixedmodel

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.7 years ago by c.taylor • 0

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dream variancePartition limma differential expression repeated measures

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by hermidalc ▴ 20

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variancePartition mixedmodel dream

8 months ago hayleyw • 0

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limma voom variancePartition dream

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.8 years ago by Ben ▴ 50

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DESeq2 variancePartition

13 months ago • updated 12 months ago Weiqian ▴ 10

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829

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variancePartition RNASeqData limma BulkRNAseq RNASeq

updated 4 months ago by Gordon Smyth 50k • written 6 months ago by Gimena • 0

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variancePartition limma BiocParallel

3.0 years ago Junghoon ▴ 10

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edgeR limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jackgisby • 0

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BiocParallel limma variancePartition

3.0 years ago • updated 2.9 years ago Junghoon ▴ 10

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598

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variancePartition BiocParallel

4 months ago hayleyw • 0

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limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.9 years ago by jarod ▴ 30

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953

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variancePa variancePartition limma-voom dream

updated 14 months ago by Gordon Smyth 50k • written 14 months ago by Le • 0

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684

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RNAseq variancePartition edgeR dream

13 months ago DH • 0

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789

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variancePartition limma

3.0 years ago Junghoon ▴ 10

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expression variancePartition edgeR

20 months ago Jonathan • 0

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variancePartition

14 days ago Le • 0

16 results • Page 1 of 1

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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