Bioconductor VariancePartition

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variancePartition

18 days ago Le • 0

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variancePartition BiocParallel

4 months ago hayleyw • 0

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845

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variancePartition RNASeqData limma BulkRNAseq RNASeq

updated 5 months ago by Gordon Smyth 50k • written 7 months ago by Gimena • 0

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variancePartition mixedmodel dream

8 months ago hayleyw • 0

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1.5k

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DESeq2 variancePartition

13 months ago • updated 12 months ago Weiqian ▴ 10

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692

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RNAseq variancePartition edgeR dream

14 months ago • updated 13 months ago DH • 0

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961

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variancePa variancePartition limma-voom dream

updated 14 months ago by Gordon Smyth 50k • written 14 months ago by Le • 0

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451

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expression variancePartition edgeR

21 months ago Jonathan • 0

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edgeR limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jackgisby • 0

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1.3k

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limma variancePartition

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by jarod ▴ 30

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1.1k

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BiocParallel limma variancePartition

3.0 years ago • updated 2.9 years ago Junghoon ▴ 10

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791

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variancePartition limma

3.0 years ago Junghoon ▴ 10

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1.1k

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variancePartition limma BiocParallel

3.0 years ago Junghoon ▴ 10

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2.4k

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dream variancePartition limma differential expression repeated measures

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by hermidalc ▴ 20

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1.5k

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variancepartition lme4 mixedmodel

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.7 years ago by c.taylor • 0

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limma voom variancePartition dream

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.9 years ago by Ben ▴ 50

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k