Showing : variancepartition • reset
0
votes
1
reply
157
views
How to model DE for RNA-seq in concordant monozygotic twins?
RNASeq variancePartition RUVSeq limma edgeR
updated 4 weeks ago by 53k • written 5 weeks ago by • 0
0
votes
0
replies
366
views
Testing Differential Expression with Interaction Effect Between Categorical and Continuous Variable with Repeated (Paired) Measures using variancePar…
limma variancePartition
9 months ago GJ • 0
0
votes
2
replies
875
views
sva: get a sv for RIN scores
limma sva variancePartition voom RNASeq
updated 11 months ago by 53k • written 11 months ago by ▴ 10
0
votes
9
replies
1.7k
views
Differential Expression Genes as Independent Variables
limma DifferentialExpression variancePartition dream
updated 11 months ago by 68k • written 11 months ago by • 0
1
vote
3
replies
846
views
makeContrastsDream for Interaction
limma DifferentialExpression variancePartition dream
12 months ago • updated 11 months ago abadgerw • 0
0
votes
5
replies
1.1k
views
Merge Replicates vs Mixed Model
limma DifferentialExpression variancePartition dream
12 months ago • updated 11 months ago abadgerw • 0
2
votes
9
replies
1.5k
views
Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multiple Tissues and Patients
edgeR variancePartition
updated 14 months ago by 53k • written 14 months ago by • 0
1
vote
2
replies
935
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
18 months ago Le • 0
1
vote
4
replies
2.3k
views
BiocParallel serialization errors on Windows
variancePartition BiocParallel
23 months ago hayleyw • 0
1
vote
7
replies
1.8k
views
DuplicateCorrelation() block by duplicate sample or by cell line ?
variancePartition RNASeqData limma BulkRNAseq RNASeq
updated 23 months ago by 53k • written 2.1 years ago by • 0
0
votes
9
replies
1.9k
views
How long does it usually take to complete dream() from start to finish?
variancePartition mixedmodel dream
2.2 years ago hayleyw • 0
1
vote
5
replies
2.9k
views
How many parameters should be included in the model design for deseq2?
DESeq2 variancePartition
2.6 years ago • updated 2.5 years ago Weiqian ▴ 10
1
vote
4
replies
1.3k
views
Repeated Measures-Cross Over Study for RNAseq data using variancePartition::dream
RNAseq variancePartition edgeR dream
2.7 years ago • updated 2.6 years ago DH • 0
0
votes
5
replies
1.8k
views
Semi-technical replicates and voom sample weights
variancePa variancePartition limma-voom dream
updated 2.7 years ago by 53k • written 2.7 years ago by • 0
0
votes
0
replies
851
views
Argument is of length zero in variancePartition/Dream
expression variancePartition edgeR
3.2 years ago Jonathan • 0
1
vote
1
reply
1.9k
views
Repeated measures RNAseq analysis (edgeR or limma-voom)
edgeR limma variancePartition
updated 4.3 years ago by 53k • written 4.3 years ago by • 0
1
vote
3
replies
1.9k
views
limma - contrast matrix hypothesis testing
limma variancePartition
updated 4.4 years ago by 53k • written 4.4 years ago by ▴ 30
1
vote
0
replies
1.2k
views
What are cov.coefficients and cov.coefficients.list returned by dream()?
variancePartition limma
4.5 years ago Junghoon ▴ 10
0
votes
1
reply
1.7k
views
Error while running variancePartition::dream()
variancePartition limma BiocParallel
4.5 years ago Junghoon ▴ 10
0
votes
1
reply
1.6k
views
Excessive memory requirement of variancePartition::dream()
BiocParallel limma variancePartition
4.5 years ago • updated 4.4 years ago Junghoon ▴ 10
10
votes
11
replies
3.7k
views
dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream variancePartition limma differential expression repeated measures
updated 6.1 years ago by 53k • written 6.1 years ago by ▴ 20
3
votes
8
replies
2.5k
views
Results from variancePartition not matching those from lme4
variancepartition lme4 mixedmodel
updated 6.1 years ago by ▴ 170 • written 6.2 years ago by • 0
4
votes
3
replies
3.0k
views
Blocking factor in limma/voom vs. variancePartition/dream analysis.
limma voom variancePartition dream
updated 6.1 years ago by ▴ 170 • written 6.4 years ago by ▴ 50
23 results • Page 1 of 1
Recent ...
Replies
Answer: Suppress warning in RHDF5 write by James W. MacDonald 68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Awards • All
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
Popular Question to Fred Hutch (Recruiting) ▴ 40
Popular Question to shepherl 4.2k
Locations • All
Poland, just now
India, 1 minute ago
Pittsburgh, United States, 16 minutes ago
United States, 42 minutes ago
France, 45 minutes ago
Traffic: 773 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6