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apeglm Install DESeq2 version

updated 3 months ago by James W. MacDonald 68k • written 3 months ago by Asma • 0

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version PureCN

updated 5.9 years ago by Mike Smith ★ 6.6k • written 5.9 years ago by twtoal ▴ 10

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version

updated 6.0 years ago by shepherl 4.2k • written 6.0 years ago by efratushava • 0

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update new release version

6.1 years ago zzrickli • 0

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deseq2 outliers version

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by aec ▴ 90

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6.9k

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software error package installation version

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by syxxcenshi • 0

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1.5k

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deseq2 version multiple factor design

updated 8.2 years ago by Gavin Kelly ▴ 690 • written 8.2 years ago by maksims.fiosins • 0

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version

updated 10.4 years ago by Marc Carlson ★ 7.2k • written 10.4 years ago by msp.cse • 0

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version release library

updated 10.6 years ago by Hotz, Hans-Rudolf ▴ 400 • written 10.6 years ago by Malcolm Cook ★ 1.6k

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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