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limma RNASeq voom

updated 3 days ago by Gordon Smyth 50k • written 3 days ago by taur.vil • 0

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174

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Voom Limma WGCNA

22 days ago Gimena • 0

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535

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DEG edgeR limma voom filterByExpr

updated 4 months ago by Gordon Smyth 50k • written 4 months ago by annikagable • 0

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771

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edgeR limma voom RNASeq muscat

updated 4 months ago by Gordon Smyth 50k • written 4 months ago by annikagable • 0

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519

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stats r RNASeqData limma voom

5 months ago pl23 • 0

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591

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voom RNASeq limma

5 months ago Tyler Sagendorf ▴ 10

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692

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voom blocking limma

updated 6 months ago by Gordon Smyth 50k • written 6 months ago by Gerhard Thallinger ▴ 180

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2.7k

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limma edger timecourse without replicate voom

written 7.4 years ago by Camila Orellana ▴ 10

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962

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GSEA voom limma

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by manuelsokolov • 0

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1.0k

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limmaGUI normalization limma voom Normalization

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by manuelsokolov • 0

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448

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RNASeqData limma voom PFS DGE

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by manuelsokolov • 0

11 results • Page 1 of 1

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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0