Bioconductor Voom

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805

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edgeR limma voom RNASeq muscat

updated 5 months ago by Gordon Smyth 50k • written 5 months ago by annikagable • 0

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706

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voom blocking limma

updated 6 months ago by Gordon Smyth 50k • written 6 months ago by Gerhard Thallinger ▴ 180

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560

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DEG edgeR limma voom filterByExpr

updated 5 months ago by Gordon Smyth 50k • written 5 months ago by annikagable • 0

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534

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stats r RNASeqData limma voom

5 months ago pl23 • 0

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609

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voom RNASeq limma

5 months ago Tyler Sagendorf ▴ 10

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1.0k

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limmaGUI normalization limma voom Normalization

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

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2.7k

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limma edger timecourse without replicate voom

written 7.5 years ago by Camila Orellana ▴ 10

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986

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GSEA voom limma

updated 9 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

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191

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Voom Limma WGCNA

4 weeks ago Gimena • 0

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165

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limma RNASeq voom

written 13 days ago by taur.vil • 0

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458

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RNASeqData limma voom PFS DGE

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by manuelsokolov • 0

11 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …

Answer: How to save the DEXSeq results by Michael Love 41k

If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…

Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k

Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …

Answer: Couldn't connect to server while using "pathways" by James W. MacDonald 65k

As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…

Answer: Trim/Filter out-of-bounds GRanges by Michael Love 41k

https://support.bioconductor.org/p/73432/#73448

Votes

Answer: Method to find pathways different between 2 groups

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: Method to find pathways different between 2 groups

Comment: Trying to use enrichGO

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Popular Question to Vincent J. Carey, Jr. 6.7k

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