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limma 2x2 factorial contrast.matrix
limma
weaver
limma
weaver
13.9 years ago
Ben Nota
▴ 10
0
votes
3
replies
953
views
interaction term contrast in Weaver mutant example of LIMMA manual
limma
weaver
limma
weaver
updated 14.6 years ago by
James W. MacDonald
65k • written 14.6 years ago by
Erika Melissari
▴ 250
0
votes
0
replies
1.2k
views
subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
GO
weaver
GO
weaver
15.5 years ago
Elliot Kleiman
▴ 150
0
votes
1
reply
2.0k
views
Limma user’s guide example data sets
Microarray
limma
limmaGUI
weaver
Microarray
limma
limmaGUI
weaver
updated 15.8 years ago by
Wang, Jixin
▴ 130 • written 15.8 years ago by
Keith Satterley
▴ 450
0
votes
0
replies
950
views
Limma user’s guide example data sets
Microarray
limma
weaver
Microarray
limma
weaver
15.8 years ago
Wang, Jixin
▴ 130
0
votes
0
replies
873
views
Limma - using both array and spot weights in lmFit
Genetics
limma
weaver
Genetics
limma
weaver
16.9 years ago
Gordon Smyth
50k
0
votes
0
replies
801
views
Advice on how to compare two different sources on cDNA
limma
weaver
limma
weaver
17.2 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
783
views
limma example Weaver Data
limma
weaver
limma
weaver
18.8 years ago
Gordon Smyth
50k
0
votes
3
replies
1.3k
views
limma example Weaver Data
limma
weaver
limma
weaver
updated 18.8 years ago by
Gordon Smyth
50k • written 18.8 years ago by
Wenbin Liu
▴ 100
0
votes
0
replies
938
views
Controls and duplicate correlation
limma
weaver
limma
weaver
18.9 years ago
lepalmer@notes.cc.sunysb.edu
▴ 40
0
votes
3
replies
1.2k
views
design in mixed ref and dye-swap experiment
limma
weaver
limma
weaver
updated 19.0 years ago by
Gordon Smyth
50k • written 19.0 years ago by
Silvano Piazza
▴ 50
0
votes
0
replies
2.3k
views
limma design matrix
GO
limma
PROcess
weaver
GO
limma
PROcess
weaver
20.1 years ago
Gordon Smyth
50k
0
votes
2
replies
986
views
limma missing files
weaver
weaver
updated 20.9 years ago by
Gordon Smyth
50k • written 20.9 years ago by
Dick Beyer
★ 1.4k
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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