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Spam: wealthdt5
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3 months ago Enfurry 0
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limma 2x2 factorial contrast.matrix
limma weaver limma weaver
15.4 years ago Ben Nota ▴ 10
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interaction term contrast in Weaver mutant example of LIMMA manual
limma weaver limma weaver
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 250
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subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
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17.0 years ago Elliot Kleiman ▴ 150
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Limma user’s guide example data sets
Microarray limma limmaGUI weaver Microarray limma limmaGUI weaver
updated 17.4 years ago by ▴ 130 • written 17.4 years ago by ▴ 450
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Limma user’s guide example data sets
Microarray limma weaver Microarray limma weaver
17.4 years ago Wang, Jixin ▴ 130
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Limma - using both array and spot weights in lmFit
Genetics limma weaver Genetics limma weaver
18.4 years ago Gordon Smyth 53k
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Advice on how to compare two different sources on cDNA
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18.7 years ago Marcelo Laia ▴ 450
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limma example Weaver Data
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20.4 years ago Gordon Smyth 53k
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limma example Weaver Data
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updated 20.4 years ago by 53k • written 20.4 years ago by ▴ 100
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Controls and duplicate correlation
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20.4 years ago lepalmer@notes.cc.sunysb.edu ▴ 40
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design in mixed ref and dye-swap experiment
limma weaver limma weaver
updated 20.5 years ago by 53k • written 20.6 years ago by ▴ 50
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limma design matrix
GO limma PROcess weaver GO limma PROcess weaver
21.6 years ago Gordon Smyth 53k
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limma missing files
weaver weaver
updated 22.4 years ago by 53k • written 22.4 years ago by ★ 1.4k
14 results • Page 1 of 1
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
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Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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