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weaver
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Spam:
wealthdt5
weaver
wealth
7 months ago
Enfurry
0
0
votes
0
replies
1.4k
views
limma 2x2 factorial contrast.matrix
limma
weaver
limma
weaver
15.7 years ago
Ben Nota
▴ 10
0
votes
3
replies
1.4k
views
interaction term contrast in Weaver mutant example of LIMMA manual
limma
weaver
limma
weaver
updated 16.4 years ago by
James W. MacDonald
68k • written 16.4 years ago by
Erika Melissari
▴ 250
0
votes
0
replies
1.6k
views
subscript out of bounds halting error when Sweaving with weaver And GOstats' HyperGTest
GO
weaver
GO
weaver
17.3 years ago
Elliot Kleiman
▴ 150
0
votes
1
reply
2.5k
views
Limma user’s guide example data sets
Microarray
limma
limmaGUI
weaver
Microarray
limma
limmaGUI
weaver
updated 17.6 years ago by
Wang, Jixin
▴ 130 • written 17.6 years ago by
Keith Satterley
▴ 450
0
votes
0
replies
1.3k
views
Limma user’s guide example data sets
Microarray
limma
weaver
Microarray
limma
weaver
17.6 years ago
Wang, Jixin
▴ 130
0
votes
0
replies
1.2k
views
Limma - using both array and spot weights in lmFit
Genetics
limma
weaver
Genetics
limma
weaver
18.7 years ago
Gordon Smyth
53k
0
votes
0
replies
1.1k
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Advice on how to compare two different sources on cDNA
limma
weaver
limma
weaver
19.0 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.1k
views
limma example Weaver Data
limma
weaver
limma
weaver
20.6 years ago
Gordon Smyth
53k
0
votes
3
replies
1.8k
views
limma example Weaver Data
limma
weaver
limma
weaver
updated 20.6 years ago by
Gordon Smyth
53k • written 20.6 years ago by
Wenbin Liu
▴ 100
0
votes
0
replies
1.2k
views
Controls and duplicate correlation
limma
weaver
limma
weaver
20.7 years ago
lepalmer@notes.cc.sunysb.edu
▴ 40
0
votes
3
replies
1.6k
views
design in mixed ref and dye-swap experiment
limma
weaver
limma
weaver
updated 20.8 years ago by
Gordon Smyth
53k • written 20.8 years ago by
Silvano Piazza
▴ 50
0
votes
0
replies
2.9k
views
limma design matrix
GO
limma
PROcess
weaver
GO
limma
PROcess
weaver
21.9 years ago
Gordon Smyth
53k
0
votes
2
replies
1.4k
views
limma missing files
weaver
weaver
updated 22.7 years ago by
Gordon Smyth
53k • written 22.7 years ago by
Dick Beyer
★ 1.4k
14 results • Page
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Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…
Comment: Clarification on counting in Rsubread (featureCounts)
by
Luca
• 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts)
by
Frances Turner
▴ 20
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Votes
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
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James W. MacDonald
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fl
▴ 20
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Lluís Revilla Sancho
▴ 760
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Gordon Smyth
53k
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Aleena_Ensembl
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