Bioconductor Workflow

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Bioconductor Workflow

updated 2.3 years ago by Gordon Smyth 50k • written 2.3 years ago by sarastew1994 • 0

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ExperimentData Deprecation Software Release Workflow

2.5 years ago • updated 2.0 years ago shepherl 3.8k

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Workflow Software ExperimentData Deprecation

3.4 years ago • updated 3.0 years ago shepherl 3.8k

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786

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Software annotation experiment workflow

updated 3.7 years ago by shepherl 3.8k • written 3.7 years ago by gnanaprakash.s • 0

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766

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rnaseqGene workflow deseq2

updated 4.3 years ago by Michael Love 41k • written 4.3 years ago by Assa Yeroslaviz ★ 1.5k

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software error deseq2 workflow rnaseqGene

updated 4.8 years ago by Martin Morgan 25k • written 4.8 years ago by pavan-bioconductor • 0

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RNA-Seq Workflow

updated 4.9 years ago by Gordon Smyth 50k • written 4.9 years ago by detroit.drive • 0

7 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

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Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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