Biostar Workflow

Showing : Workflow • reset

votes

replies

429

views

Workflow Software ExperimentData Deprecation

7 months ago • updated 11 weeks ago shepherl 2.8k

votes

replies

169

views

Software annotation experiment workflow

updated 11 months ago by shepherl 2.8k • written 11 months ago by gnanaprakash.s • 0

vote

replies

140

views

rnaseqGene workflow deseq2

updated 18 months ago by Michael Love 33k • written 18 months ago by Assa Yeroslaviz ★ 1.5k

votes

replies

883

views

software error deseq2 workflow rnaseqGene

updated 2.1 years ago by Martin Morgan 25k • written 2.1 years ago by pavan-bioconductor • 0

votes

replies

290

views

RNA-Seq Workflow

updated 2.2 years ago by Gordon Smyth 43k • written 2.2 years ago by detroit.drive • 0

5 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Michael Love 33k

What is the correlation of the LFC for your two contrasts of mut vs wt in auto ganglia? Does the scatterplot of log2 fold changes look like…

Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350

Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…

Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels by Gordon Smyth 43k

> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels? NA values are n…

Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k

The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…

Comment: error in getBM (biomaRt): "error: no such table: metadata" by Mike Smith ★ 5.0k

Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…

Votes

tximeta error in fetching genome info

Answer: error in getBM (biomaRt): "error: no such table: metadata"

C: DESeq2 design formula: single control for multiple conditions [RIP-seq]

DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

Answer: cannot install edgeR on M1 Mac

Awards • All

Scholar to James W. MacDonald 57k

Teacher to Guido Hooiveld ★ 3.0k

Scholar to Michael Love 33k