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Comment: Comment: fgsea stuck in an infinite loop in the middle of the run
7 months ago BioinfGuru ▴ 70
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634
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Answer: Answer: PCA analysis RNA-Seq QC looks strange?
7 months ago BioinfGuru ▴ 70
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0
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1.2k
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Answer: Answer: Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
7 months ago BioinfGuru ▴ 70
0
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0
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336
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Are equal whisker lengths important in an RLE plot?
EDASeq EDA
7 months ago BioinfGuru ▴ 70
0
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0
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942
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Comment: Comment: R is Removing the Gene Names in My Count Data
7 months ago BioinfGuru ▴ 70
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0
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858
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Comment: Comment: RUV - Does my data need further normalisation?
8 months ago BioinfGuru ▴ 70
0
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0
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616
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Comment: Comment: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
8 months ago BioinfGuru ▴ 70
0
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0
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858
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Comment: Comment: RUV - Does my data need further normalisation?
8 months ago BioinfGuru ▴ 70
2
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3
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858
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RUV - Does my data need further normalisation?
EDASeq plotRLE RNAseq
8 months ago BioinfGuru ▴ 70
2
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2
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616
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Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq DESeq2 dese
8 months ago BioinfGuru ▴ 70
1
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1.8k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
8 months ago BioinfGuru ▴ 70
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2
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1.8k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
8 months ago BioinfGuru ▴ 70
0
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0
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2.3k
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Comment: Comment: how to plot multiple RLEs on same plot?
8 months ago BioinfGuru ▴ 70
0
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2
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1.8k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
8 months ago BioinfGuru ▴ 70
3
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1
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1.8k
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Answer: Answer: Deseq2 design formula and analysis with internal controls
8 months ago BioinfGuru ▴ 70
0
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1
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1.7k
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Comment: Comment: What does evidence of batch effect in bulk rnaseq look like?
8 months ago BioinfGuru ▴ 70
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1
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1.7k
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Comment: Comment: What does evidence of batch effect in bulk rnaseq look like?
8 months ago BioinfGuru ▴ 70
4
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7
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1.7k
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What does evidence of batch effect in bulk rnaseq look like?
surrogatevariables DESeq2 BatchEffect bulkrna-seq sva-seq
updated 8 months ago by ▴ 10 • written 9 months ago by ▴ 70
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0
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690
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Comment: Comment: Double normalising when using sva and deseq2
10 months ago BioinfGuru ▴ 70
2
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2
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690
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Double normalising when using sva and deseq2
DESeq2 Normalisation Bulkrnaseq Svaseq
10 months ago BioinfGuru ▴ 70
0
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0
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1.8k
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
10 months ago BioinfGuru ▴ 70
0
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0
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921
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Answer: Answer: How to add Ensembl ids after Pseudobulk analysis by DESeq2
10 months ago BioinfGuru ▴ 70
0
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0
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891
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Comment: Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
11 months ago BioinfGuru ▴ 70
0
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0
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1.8k
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
11 months ago BioinfGuru ▴ 70
0
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1
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1.8k
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
11 months ago BioinfGuru ▴ 70
1
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2
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891
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2 eigencorplot PCAtools
11 months ago BioinfGuru ▴ 70
1
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0
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5.3k
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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
11 months ago BioinfGuru ▴ 70
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0
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1.9k
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Comment: C: Size limit of external data
7.0 years ago BioinfGuru ▴ 70
2
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2
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1.9k
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Size limit of external data
package development size limit external data
updated 7.0 years ago by ★ 28k • written 7.0 years ago by ▴ 70
0
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0
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1.7k
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Comment: C: Upregulation and Downregulation of Gene Ontology terms
7.1 years ago BioinfGuru ▴ 70
0
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1
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1.7k
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Comment: C: Upregulation and Downregulation of Gene Ontology terms
7.1 years ago BioinfGuru ▴ 70
0
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0
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2.6k
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Comment: C: Tissue Specificity R-package
7.1 years ago BioinfGuru ▴ 70
0
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1
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2.6k
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Comment: C: Tissue Specificity R-package
7.1 years ago BioinfGuru ▴ 70
0
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1
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2.6k
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Comment: C: Tissue Specificity R-package
7.1 years ago BioinfGuru ▴ 70
1
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5
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2.6k
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Tissue Specificity R-package
tissue specificity r package package development
updated 7.1 years ago by ▴ 140 • written 7.1 years ago by ▴ 70
0
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0
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2.0k
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Comment: C: Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remov
7.2 years ago BioinfGuru ▴ 70
2
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2
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2.0k
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Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remove latest version of R?
ChIPpeakAnno
updated 7.2 years ago by ★ 6.6k • written 7.2 years ago by ▴ 70
0
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0
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1.4k
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Comment: C: Diffbind results - non uniform width
7.9 years ago BioinfGuru ▴ 70
1
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2
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1.4k
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Diffbind results - non uniform width
diffbind dba.count
updated 7.9 years ago by ★ 5.2k • written 7.9 years ago by ▴ 70
5
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7
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5.3k
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Differential binding of ATAC-seq data with no replicates
ATAC differential binding analysis no replicates DEseq2 chromatin
8.1 years ago BioinfGuru ▴ 70
0
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1
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5.3k
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Comment: C: Differential binding of ATAC-seq data with no replicates
8.1 years ago BioinfGuru ▴ 70
0
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1
reply
1.6k
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Using Diffbind on ATAC data - adapter offset issue
Diffbind Atac adapters
updated 8.1 years ago by ★ 5.2k • written 8.1 years ago by ▴ 70
0
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1
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5.3k
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Comment: C: Differential binding of ATAC-seq data with no replicates
8.1 years ago BioinfGuru ▴ 70
0
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0
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5.3k
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Comment: C: Differential binding of ATAC-seq data with no replicates
8.1 years ago BioinfGuru ▴ 70
1
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1
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10k
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Answer: A: DiffBind for ATAC-seq
8.1 years ago BioinfGuru ▴ 70
0
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1
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2.4k
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Merging files with gene expression data
merge rnaseq files
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 70
46 results • Page 1 of 1
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