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Comment: Comment: fgsea stuck in an infinite loop in the middle of the run
3 months ago BioinfGuru ▴ 70
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533
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Answer: Answer: PCA analysis RNA-Seq QC looks strange?
3 months ago BioinfGuru ▴ 70
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0
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918
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Answer: Answer: Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
3 months ago BioinfGuru ▴ 70
0
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0
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274
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Are equal whisker lengths important in an RLE plot?
EDASeq EDA
4 months ago BioinfGuru ▴ 70
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0
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641
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Comment: Comment: R is Removing the Gene Names in My Count Data
4 months ago BioinfGuru ▴ 70
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0
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561
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Comment: Comment: RUV - Does my data need further normalisation?
4 months ago BioinfGuru ▴ 70
0
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0
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510
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Comment: Comment: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
4 months ago BioinfGuru ▴ 70
0
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0
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561
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Comment: Comment: RUV - Does my data need further normalisation?
4 months ago BioinfGuru ▴ 70
2
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3
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561
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RUV - Does my data need further normalisation?
EDASeq plotRLE RNAseq
4 months ago BioinfGuru ▴ 70
2
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2
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510
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Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq DESeq2 dese
4 months ago BioinfGuru ▴ 70
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0
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1.5k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
4 months ago BioinfGuru ▴ 70
0
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2
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1.5k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
4 months ago BioinfGuru ▴ 70
0
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0
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2.1k
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Comment: Comment: how to plot multiple RLEs on same plot?
4 months ago BioinfGuru ▴ 70
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2
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1.5k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
4 months ago BioinfGuru ▴ 70
3
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1
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1.5k
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Answer: Answer: Deseq2 design formula and analysis with internal controls
4 months ago BioinfGuru ▴ 70
0
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1
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1.2k
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Comment: Comment: What does evidence of batch effect in bulk rnaseq look like?
4 months ago BioinfGuru ▴ 70
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1
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1.2k
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Comment: Comment: What does evidence of batch effect in bulk rnaseq look like?
4 months ago BioinfGuru ▴ 70
4
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7
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1.2k
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What does evidence of batch effect in bulk rnaseq look like?
surrogatevariables DESeq2 BatchEffect bulkrna-seq sva-seq
updated 4 months ago by ▴ 10 • written 5 months ago by ▴ 70
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0
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489
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Comment: Comment: Double normalising when using sva and deseq2
6 months ago BioinfGuru ▴ 70
2
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2
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489
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Double normalising when using sva and deseq2
DESeq2 Normalisation Bulkrnaseq Svaseq
6 months ago BioinfGuru ▴ 70
0
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0
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1.4k
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
6 months ago BioinfGuru ▴ 70
0
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0
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633
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Answer: Answer: How to add Ensembl ids after Pseudobulk analysis by DESeq2
7 months ago BioinfGuru ▴ 70
0
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0
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660
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Comment: Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
7 months ago BioinfGuru ▴ 70
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0
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1.4k
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
7 months ago BioinfGuru ▴ 70
0
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1
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1.4k
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
7 months ago BioinfGuru ▴ 70
1
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2
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660
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2 eigencorplot PCAtools
7 months ago BioinfGuru ▴ 70
1
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0
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3.5k
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Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
8 months ago BioinfGuru ▴ 70
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0
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1.8k
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Comment: C: Size limit of external data
6.7 years ago BioinfGuru ▴ 70
2
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2
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1.8k
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Size limit of external data
package development size limit external data
updated 6.7 years ago by ★ 28k • written 6.7 years ago by ▴ 70
0
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0
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1.6k
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Comment: C: Upregulation and Downregulation of Gene Ontology terms
6.8 years ago BioinfGuru ▴ 70
0
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1
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1.6k
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Comment: C: Upregulation and Downregulation of Gene Ontology terms
6.8 years ago BioinfGuru ▴ 70
0
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0
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2.4k
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Comment: C: Tissue Specificity R-package
6.8 years ago BioinfGuru ▴ 70
0
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1
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2.4k
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Comment: C: Tissue Specificity R-package
6.8 years ago BioinfGuru ▴ 70
0
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1
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2.4k
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Comment: C: Tissue Specificity R-package
6.8 years ago BioinfGuru ▴ 70
1
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5
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2.4k
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Tissue Specificity R-package
tissue specificity r package package development
updated 6.8 years ago by ▴ 140 • written 6.8 years ago by ▴ 70
0
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0
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1.9k
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Comment: C: Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remov
6.9 years ago BioinfGuru ▴ 70
2
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2
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1.9k
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Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remove latest version of R?
ChIPpeakAnno
updated 6.9 years ago by ★ 6.6k • written 6.9 years ago by ▴ 70
0
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0
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1.3k
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Comment: C: Diffbind results - non uniform width
7.6 years ago BioinfGuru ▴ 70
1
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2
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1.3k
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Diffbind results - non uniform width
diffbind dba.count
updated 7.6 years ago by ★ 5.2k • written 7.6 years ago by ▴ 70
5
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7
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5.0k
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Differential binding of ATAC-seq data with no replicates
ATAC differential binding analysis no replicates DEseq2 chromatin
7.8 years ago BioinfGuru ▴ 70
0
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1
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5.0k
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Comment: C: Differential binding of ATAC-seq data with no replicates
7.8 years ago BioinfGuru ▴ 70
0
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1
reply
1.5k
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Using Diffbind on ATAC data - adapter offset issue
Diffbind Atac adapters
updated 7.8 years ago by ★ 5.2k • written 7.8 years ago by ▴ 70
0
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1
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5.0k
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Comment: C: Differential binding of ATAC-seq data with no replicates
7.8 years ago BioinfGuru ▴ 70
0
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0
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5.0k
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Comment: C: Differential binding of ATAC-seq data with no replicates
7.8 years ago BioinfGuru ▴ 70
1
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1
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9.8k
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Answer: A: DiffBind for ATAC-seq
7.8 years ago BioinfGuru ▴ 70
0
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1
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2.2k
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Merging files with gene expression data
merge rnaseq files
updated 8.2 years ago by • 0 • written 8.2 years ago by ▴ 70
46 results • Page 1 of 1
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