Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.3k
views
Comment: Comment: fgsea stuck in an infinite loop in the middle of the run
17 months ago BioinfGuru ▴ 70
0
votes
0
replies
909
views
Answer: Answer: PCA analysis RNA-Seq QC looks strange?
17 months ago BioinfGuru ▴ 70
0
votes
0
replies
1.9k
views
Answer: Answer: Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
17 months ago BioinfGuru ▴ 70
0
votes
0
replies
541
views
Are equal whisker lengths important in an RLE plot?
EDASeq EDA
18 months ago BioinfGuru ▴ 70
0
votes
0
replies
1.3k
views
Comment: Comment: R is Removing the Gene Names in My Count Data
18 months ago BioinfGuru ▴ 70
0
votes
0
replies
1.4k
views
Comment: Comment: RUV - Does my data need further normalisation?
18 months ago BioinfGuru ▴ 70
0
votes
0
replies
959
views
Comment: Comment: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
18 months ago BioinfGuru ▴ 70
0
votes
0
replies
1.4k
views
Comment: Comment: RUV - Does my data need further normalisation?
18 months ago BioinfGuru ▴ 70
2
votes
3
replies
1.4k
views
RUV - Does my data need further normalisation?
EDASeq plotRLE RNAseq
18 months ago BioinfGuru ▴ 70
2
votes
2
replies
959
views
Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq DESeq2 dese
18 months ago BioinfGuru ▴ 70
1
vote
0
replies
2.8k
views
Comment: Comment: Deseq2 design formula and analysis with internal controls
18 months ago BioinfGuru ▴ 70
0
votes
2
replies
2.8k
views
Comment: Comment: Deseq2 design formula and analysis with internal controls
18 months ago BioinfGuru ▴ 70
0
votes
0
replies
2.8k
views
Comment: Comment: how to plot multiple RLEs on same plot?
18 months ago BioinfGuru ▴ 70
0
votes
2
replies
2.8k
views
Comment: Comment: Deseq2 design formula and analysis with internal controls
18 months ago BioinfGuru ▴ 70
3
votes
1
reply
2.8k
views
Answer: Answer: Deseq2 design formula and analysis with internal controls
18 months ago BioinfGuru ▴ 70
0
votes
1
reply
2.7k
views
Comment: Comment: What does evidence of batch effect in bulk rnaseq look like?
18 months ago BioinfGuru ▴ 70
0
votes
1
reply
2.7k
views
Comment: Comment: What does evidence of batch effect in bulk rnaseq look like?
18 months ago BioinfGuru ▴ 70
4
votes
7
replies
2.7k
views
What does evidence of batch effect in bulk rnaseq look like?
surrogatevariables DESeq2 BatchEffect bulkrna-seq sva-seq
updated 18 months ago by ▴ 10 • written 19 months ago by ▴ 70
0
votes
0
replies
1.0k
views
Comment: Comment: Double normalising when using sva and deseq2
20 months ago BioinfGuru ▴ 70
2
votes
2
replies
1.0k
views
Double normalising when using sva and deseq2
DESeq2 Normalisation Bulkrnaseq Svaseq
20 months ago BioinfGuru ▴ 70
0
votes
0
replies
2.5k
views
Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
20 months ago BioinfGuru ▴ 70
0
votes
0
replies
1.4k
views
Answer: Answer: How to add Ensembl ids after Pseudobulk analysis by DESeq2
20 months ago BioinfGuru ▴ 70
0
votes
0
replies
1.2k
views
Comment: Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
21 months ago BioinfGuru ▴ 70
0
votes
0
replies
2.5k
views
Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
21 months ago BioinfGuru ▴ 70
0
votes
1
reply
2.5k
views
Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
21 months ago BioinfGuru ▴ 70
1
vote
2
replies
1.2k
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2 eigencorplot PCAtools
21 months ago BioinfGuru ▴ 70
1
vote
0
replies
11k
views
Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
22 months ago BioinfGuru ▴ 70
0
votes
0
replies
2.2k
views
Comment: C: Size limit of external data
7.8 years ago BioinfGuru ▴ 70
2
votes
2
replies
2.2k
views
Size limit of external data
package development size limit external data
updated 7.8 years ago by ★ 29k • written 7.8 years ago by ▴ 70
0
votes
0
replies
2.0k
views
Comment: C: Upregulation and Downregulation of Gene Ontology terms
7.9 years ago BioinfGuru ▴ 70
0
votes
1
reply
2.0k
views
Comment: C: Upregulation and Downregulation of Gene Ontology terms
7.9 years ago BioinfGuru ▴ 70
0
votes
0
replies
3.1k
views
Comment: C: Tissue Specificity R-package
8.0 years ago BioinfGuru ▴ 70
0
votes
1
reply
3.1k
views
Comment: C: Tissue Specificity R-package
8.0 years ago BioinfGuru ▴ 70
0
votes
1
reply
3.1k
views
Comment: C: Tissue Specificity R-package
8.0 years ago BioinfGuru ▴ 70
1
vote
5
replies
3.1k
views
Tissue Specificity R-package
tissue specificity r package package development
updated 8.0 years ago by ▴ 140 • written 8.0 years ago by ▴ 70
0
votes
0
replies
2.2k
views
Comment: C: Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remov
8.0 years ago BioinfGuru ▴ 70
2
votes
2
replies
2.2k
views
Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remove latest version of R?
ChIPpeakAnno
updated 8.0 years ago by ★ 6.6k • written 8.0 years ago by ▴ 70
0
votes
0
replies
1.6k
views
Comment: C: Diffbind results - non uniform width
8.8 years ago BioinfGuru ▴ 70
1
vote
2
replies
1.6k
views
Diffbind results - non uniform width
diffbind dba.count
updated 8.8 years ago by ★ 5.3k • written 8.8 years ago by ▴ 70
5
votes
7
replies
5.8k
views
Differential binding of ATAC-seq data with no replicates
ATAC differential binding analysis no replicates DEseq2 chromatin
8.9 years ago BioinfGuru ▴ 70
0
votes
1
reply
5.8k
views
Comment: C: Differential binding of ATAC-seq data with no replicates
8.9 years ago BioinfGuru ▴ 70
0
votes
1
reply
1.8k
views
Using Diffbind on ATAC data - adapter offset issue
Diffbind Atac adapters
updated 8.9 years ago by ★ 5.3k • written 8.9 years ago by ▴ 70
0
votes
1
reply
5.8k
views
Comment: C: Differential binding of ATAC-seq data with no replicates
8.9 years ago BioinfGuru ▴ 70
0
votes
0
replies
5.8k
views
Comment: C: Differential binding of ATAC-seq data with no replicates
8.9 years ago BioinfGuru ▴ 70
1
vote
1
reply
11k
views
Answer: A: DiffBind for ATAC-seq
8.9 years ago BioinfGuru ▴ 70
0
votes
1
reply
2.7k
views
Merging files with gene expression data
merge rnaseq files
updated 9.3 years ago by • 0 • written 9.3 years ago by ▴ 70
46 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6