Bioconductor Atac

Showing : Atac • reset

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1.2k

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ATACSeq peaks ATAC ChIPpeakAnno

20 months ago Raghad • 0

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1.8k

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rna-seq Read10X_h5 atac modalities

updated 2.9 years ago by James W. MacDonald 68k • written 2.9 years ago by Cynthia • 0

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1.3k

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ATAC DiffBind ATACSeq

updated 3.0 years ago by Rory Stark ★ 5.3k • written 3.0 years ago by Hadar • 0

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1.9k

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diffbind atac

updated 5.7 years ago by Rory Stark ★ 5.3k • written 5.7 years ago by lindsaynhayes • 0

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895

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r DiffBind ATAC

updated 5.9 years ago by Rory Stark ★ 5.3k • written 5.9 years ago by lindsaynhayes • 0

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2.6k

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limma edger atac atac-seq

updated 5.9 years ago by Aaron Lun ★ 29k • written 6.0 years ago by pgugger ▴ 70

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1.3k

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deseq2 design formula design matrix edgeR ATAC

updated 6.2 years ago by Gordon Smyth 53k • written 6.2 years ago by corinne_hutfilz • 0

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Diffbind ATAC batch correction blocking factor

updated 6.5 years ago by Rory Stark ★ 5.3k • written 6.5 years ago by rm1238 • 0

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ATACseqQC ATAC ATACseq software error Tutorial

updated 6.6 years ago by Steve Lianoglou ★ 13k • written 6.6 years ago by mbasam • 0

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4.3k

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subread featurecounts atac

updated 6.8 years ago by Wei Shi ★ 3.6k • written 6.8 years ago by aurel.nagy ▴ 10

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diffbind ATACseq ATAC counts differential analysis

updated 6.9 years ago by Rory Stark ★ 5.3k • written 6.9 years ago by pgontarz ▴ 10

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diffbind atac

updated 7.0 years ago by Rory Stark ★ 5.3k • written 7.0 years ago by paz2005 • 0

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diffbind atac

8.7 years ago niu.shengyong ▴ 10

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5.8k

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ATAC differential binding analysis no replicates DEseq2 chromatin

8.9 years ago BioinfGuru ▴ 70

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1.8k

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Diffbind Atac adapters

updated 8.9 years ago by Rory Stark ★ 5.3k • written 8.9 years ago by BioinfGuru ▴ 70

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atac-seq atac deseq2 sva combat

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by g.atla ▴ 10

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7.5k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 10.7 years ago by Gordon Smyth 53k • written 10.7 years ago by samuel collombet ▴ 140

17 results • Page 1 of 1

Recent ...

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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k