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Comment: C: Interaction with DESeq2 via DiffBind
8.2 years ago rbronste ▴ 60
0
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0
replies
1.0k
views
Comment: C: Pre-filtering DESeqDataSetFromMatrix input
8.2 years ago rbronste ▴ 60
1
vote
2
replies
1.0k
views
Pre-filtering DESeqDataSetFromMatrix input
deseq2 differential binding analysis
updated 8.2 years ago by 68k • written 8.2 years ago by ▴ 60
2
votes
1
reply
1.4k
views
Receiving error trying to import matrix into DESeq2
deseq2 deseq differential binding analysis
updated 8.2 years ago by ▴ 60 • written 8.2 years ago by ▴ 60
1
vote
1
reply
1.8k
views
Changing R package dependencies
package installation dependencies bagfootr bagfoot
updated 8.2 years ago by 21k • written 8.2 years ago by ▴ 60
0
votes
1
reply
1.6k
views
Pseudo-coloring DiffBind volcano plot
diffbind chipseq volcanoplot ggplot2
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by ▴ 60
1
vote
2
replies
1.7k
views
DiffBind DESeq2 MA plot skewed
diffbind deseq2 maplot
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by ▴ 60
0
votes
0
replies
1.5k
views
Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
8.3 years ago rbronste ▴ 60
2
votes
1
reply
3.8k
views
ChIPseeker mapping between keys and columns
chipseeker chipseq
updated 8.3 years ago by ▴ 690 • written 8.3 years ago by ▴ 60
1
vote
1
reply
1.2k
views
Diffbind Consensus vs Differential peak sets from same count
diffbind chipseq
updated 8.3 years ago by ★ 5.2k • written 8.3 years ago by ▴ 60
0
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0
replies
1.3k
views
Comment: C: DiffBind masks for counts
8.3 years ago rbronste ▴ 60
0
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0
replies
1.9k
views
Comment: C: DiffBind contrasts issue
8.3 years ago rbronste ▴ 60
1
vote
2
replies
1.3k
views
DiffBind masks for counts
diffbind chipseq
updated 8.3 years ago by ★ 5.2k • written 8.4 years ago by ▴ 60
2
votes
2
replies
1.9k
views
DiffBind contrasts issue
diffbind chipseq
updated 8.3 years ago by ★ 5.2k • written 8.4 years ago by ▴ 60
0
votes
0
replies
3.7k
views
Comment: C: samtools loading in R
8.4 years ago rbronste ▴ 60
3
votes
5
replies
3.7k
views
samtools loading in R
samtools rsamtools
updated 8 months ago by • 0 • written 8.4 years ago by ▴ 60
0
votes
1
reply
2.4k
views
Comment: C: ddCT Package for StepOnePlus qPCR output
8.4 years ago rbronste ▴ 60
0
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0
replies
2.4k
views
Comment: C: ddCT Package for StepOnePlus qPCR output
8.4 years ago rbronste ▴ 60
1
vote
4
replies
2.4k
views
ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 8.4 years ago by ▴ 120 • written 8.4 years ago by ▴ 60
0
votes
2
replies
4.8k
views
Comment: C: DiffBind BED output with score
8.6 years ago rbronste ▴ 60
0
votes
0
replies
1.2k
views
Comment: C: write.table of posterior probabilities error
8.7 years ago rbronste ▴ 60
0
votes
1
reply
1.2k
views
Comment: C: write.table of posterior probabilities error
8.7 years ago rbronste ▴ 60
1
vote
4
replies
1.2k
views
write.table of posterior probabilities error
R centipede
updated 8.7 years ago by 68k • written 8.7 years ago by ▴ 60
1
vote
1
reply
910
views
Sorting the VIEW index in ascending/descending order
R diffbind
updated 8.7 years ago by 700 • written 8.8 years ago by ▴ 60
0
votes
0
replies
1.4k
views
Centipede foot printing export
footprinting centipede atac-seq dnaseq
8.8 years ago rbronste ▴ 60
0
votes
0
replies
1.1k
views
Visualizing motif instances in peak data
motifs TF peakset plots
8.8 years ago rbronste ▴ 60
0
votes
1
reply
3.0k
views
Comment: C: DiffBind MA plot
8.9 years ago rbronste ▴ 60
2
votes
3
replies
3.0k
views
DiffBind MA plot
diffbind ma plot
updated 8.9 years ago by ★ 5.2k • written 8.9 years ago by ▴ 60
0
votes
0
replies
4.8k
views
Comment: C: DiffBind BED output with score
8.9 years ago rbronste ▴ 60
0
votes
1
reply
4.8k
views
Comment: C: DiffBind BED output with score
8.9 years ago rbronste ▴ 60
0
votes
1
reply
4.8k
views
Comment: C: DiffBind BED output with score
8.9 years ago rbronste ▴ 60
3
votes
9
replies
4.8k
views
DiffBind BED output with score
diffbind differential binding analysis
updated 8.9 years ago by ★ 5.2k • written 8.9 years ago by ▴ 60
0
votes
1
reply
837
views
Exporting differential peak sets, based on fold change and FDR
diffbind
updated 8.9 years ago by ★ 5.2k • written 8.9 years ago by ▴ 60
0
votes
1
reply
1000
views
Does dba object analysis indicate "score" in dba.count?
diffbind
updated 8.9 years ago by ★ 5.2k • written 8.9 years ago by ▴ 60
0
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1
reply
1.5k
views
Answer: A: Adding SummarizedExperiment function
8.9 years ago rbronste ▴ 60
2
votes
5
replies
1.5k
views
Adding SummarizedExperiment function
summarizedexperiment
8.9 years ago rbronste ▴ 60
0
votes
0
replies
1.5k
views
Comment: C: Adding SummarizedExperiment function
8.9 years ago rbronste ▴ 60
0
votes
1
reply
1.1k
views
DiffBind q value analysis
diffbind
updated 8.9 years ago by ▴ 670 • written 8.9 years ago by ▴ 60
0
votes
1
reply
2.8k
views
Comment: C: DiffBind for open chromatin mapping
8.9 years ago rbronste ▴ 60
0
votes
0
replies
2.8k
views
Comment: C: DiffBind for open chromatin mapping
8.9 years ago rbronste ▴ 60
1
vote
4
replies
2.8k
views
DiffBind for open chromatin mapping
diffbind dnaseseq atac-seq
8.9 years ago rbronste ▴ 60
0
votes
3
replies
1.9k
views
DiffBind EdgeR vs DeSeq2 diff peak counts
diffbind
9.0 years ago • updated 8.9 years ago rbronste ▴ 60
0
votes
0
replies
1.9k
views
Answer: A: DiffBind EdgeR vs DeSeq2 diff peak counts
8.9 years ago rbronste ▴ 60
0
votes
0
replies
1.9k
views
Answer: A: DiffBind EdgeR vs DeSeq2 diff peak counts
8.9 years ago rbronste ▴ 60
144 results • Page 3 of 3
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