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6
votes
8
replies
2.1k
views
Interaction with DESeq2 via DiffBind
diffbind deseq2 interactions
updated 2.9 years ago by • 0 • written 6.1 years ago by ▴ 60
0
votes
2
replies
972
views
DiffBind PE data
diffbind paired-end reads
updated 3.1 years ago by ★ 5.1k • written 6.9 years ago by ▴ 60
0
votes
0
replies
500
views
Comment: C: Label points on DESeq2 MA plot with interval list
4.1 years ago rbronste ▴ 60
1
vote
2
replies
500
views
Label points on DESeq2 MA plot with interval list
deseq2 maplot annotation
updated 4.1 years ago by 41k • written 4.1 years ago by ▴ 60
1
vote
1
reply
521
views
diffBind volcano plot error
DiffBind volcano plot software error
4.1 years ago rbronste ▴ 60
2
votes
3
replies
1.2k
views
Filtering counts in SummarizedExperiment
diffbind matrix summarizedexperiment rangedCounts
updated 4.1 years ago by ★ 5.1k • written 4.2 years ago by ▴ 60
0
votes
1
reply
472
views
dba.count filter example in manual
diffbind
updated 4.1 years ago by ★ 5.1k • written 4.2 years ago by ▴ 60
0
votes
1
reply
622
views
Comment: C: write.table of DESeq2 results broken down by LFC
4.1 years ago rbronste ▴ 60
0
votes
0
replies
622
views
Comment: C: write.table of DESeq2 results broken down by LFC
4.1 years ago rbronste ▴ 60
1
vote
4
replies
622
views
write.table of DESeq2 results broken down by LFC
deseq2
updated 4.1 years ago by 41k • written 4.1 years ago by ▴ 60
0
votes
0
replies
1.2k
views
Comment: C: Filtering counts in SummarizedExperiment
4.2 years ago rbronste ▴ 60
0
votes
0
replies
660
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm motifs jaspar meme motif analysis
5.0 years ago rbronste ▴ 60
0
votes
0
replies
1.1k
views
Comment: C: High normalized counts on DESeq2 MAplot
5.1 years ago rbronste ▴ 60
0
votes
0
replies
1.1k
views
Comment: C: High normalized counts on DESeq2 MAplot
5.1 years ago rbronste ▴ 60
0
votes
1
reply
1.1k
views
Comment: C: High normalized counts on DESeq2 MAplot
5.1 years ago rbronste ▴ 60
5
votes
8
replies
1.1k
views
High normalized counts on DESeq2 MAplot
deseq2 maplot
updated 5.1 years ago by 64k • written 5.1 years ago by ▴ 60
0
votes
1
reply
1.1k
views
Comment: C: High normalized counts on DESeq2 MAplot
5.1 years ago rbronste ▴ 60
0
votes
0
replies
443
views
Converting DESeq2 results to DiffBind object
deseq2 diffbind
5.1 years ago rbronste ▴ 60
0
votes
0
replies
1.1k
views
Comment: C: Split AME .tsv file into GRanges object or DataFrame
5.1 years ago rbronste ▴ 60
1
vote
2
replies
1.1k
views
Split AME .tsv file into GRanges object or DataFrame
meme ame motif dataframe granges
updated 5.1 years ago by 11k • written 5.1 years ago by ▴ 60
0
votes
4
replies
846
views
DESeq2 memory allocation question
deseq2 memory problem
updated 5.1 years ago by 41k • written 5.1 years ago by ▴ 60
0
votes
0
replies
846
views
Comment: C: DESeq2 memory allocation question
5.1 years ago rbronste ▴ 60
0
votes
0
replies
846
views
Comment: C: DESeq2 memory allocation question
5.1 years ago rbronste ▴ 60
0
votes
1
reply
931
views
Comment: C: DESeq2 group comparison
5.2 years ago rbronste ▴ 60
0
votes
3
replies
931
views
DESeq2 group comparison
deseq2 deseq differential binding analysis
updated 5.2 years ago by 41k • written 5.2 years ago by ▴ 60
0
votes
1
reply
440
views
DESeq2 relevel still gives negative log2FoldChange
deseq2
updated 5.3 years ago by 41k • written 5.3 years ago by ▴ 60
0
votes
0
replies
1.8k
views
Comment: C: DESeq2 baseMean from DiffBind summarizedExperiment
5.3 years ago rbronste ▴ 60
0
votes
1
reply
1.8k
views
Comment: C: DESeq2 baseMean from DiffBind summarizedExperiment
5.3 years ago rbronste ▴ 60
0
votes
1
reply
1.8k
views
Comment: C: DESeq2 baseMean from DiffBind summarizedExperiment
5.3 years ago rbronste ▴ 60
0
votes
1
reply
1.8k
views
Comment: C: DESeq2 baseMean from DiffBind summarizedExperiment
5.3 years ago rbronste ▴ 60
5
votes
9
replies
1.8k
views
DESeq2 baseMean from DiffBind summarizedExperiment
deseq2 diffbind basemean summarizedexperiment
5.3 years ago rbronste ▴ 60
0
votes
3
replies
811
views
3x2 comparisons in DEseq - time (3 time points) and two treatments
deseq2 deseq rna-seq multiple comparisons
updated 5.4 years ago by 41k • written 5.4 years ago by ▴ 60
0
votes
1
reply
666
views
Most liked/utilized qPCR analysis package
qPCR
updated 5.5 years ago by 49k • written 5.5 years ago by ▴ 60
0
votes
0
replies
1.6k
views
Comment: C: DESeq2 design subcategories
5.8 years ago rbronste ▴ 60
0
votes
1
reply
1.6k
views
Comment: C: DESeq2 design subcategories
5.8 years ago rbronste ▴ 60
0
votes
0
replies
1.3k
views
Comment: C: DESeq2 design and stats question
5.9 years ago rbronste ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: DESeq2 design and stats question
5.9 years ago rbronste ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: DESeq2 design and stats question
5.9 years ago rbronste ▴ 60
4
votes
6
replies
1.3k
views
DESeq2 design and stats question
deseq2 differential binding analysis deseq atac-seq
updated 5.9 years ago by 41k • written 5.9 years ago by ▴ 60
0
votes
0
replies
1.0k
views
Comment: C: biomaRT biotype TFs only
5.9 years ago rbronste ▴ 60
0
votes
0
replies
1.0k
views
Comment: C: biomaRT biotype TFs only
5.9 years ago rbronste ▴ 60
1
vote
3
replies
1.0k
views
biomaRT biotype TFs only
biomart TF biotype ensembl mus musculus
updated 5.9 years ago by ★ 6.2k • written 5.9 years ago by ▴ 60
2
votes
1
reply
1.9k
views
Error in DESeq2 plotMA from object subset
deseq2 maplot subset
updated 5.9 years ago by 41k • written 5.9 years ago by ▴ 60
0
votes
1
reply
1.2k
views
Comment: C: GRanges object from gene list
5.9 years ago rbronste ▴ 60
2
votes
3
replies
1.2k
views
GRanges object from gene list
granges bed genomicranges genomeintervals deseq2
5.9 years ago rbronste ▴ 60
0
votes
0
replies
3.0k
views
Comment: C: DESeq2 results export padj sorted
5.9 years ago rbronste ▴ 60
0
votes
1
reply
3.0k
views
Comment: C: DESeq2 results export padj sorted
5.9 years ago rbronste ▴ 60
0
votes
1
reply
3.0k
views
Comment: C: DESeq2 results export padj sorted
5.9 years ago rbronste ▴ 60
0
votes
0
replies
3.0k
views
Comment: C: DESeq2 results export padj sorted
5.9 years ago rbronste ▴ 60
0
votes
1
reply
3.0k
views
Comment: C: DESeq2 results export padj sorted
5.9 years ago rbronste ▴ 60
144 results • Page 1 of 3
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