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6
votes
8
replies
3.1k
views
Interaction with DESeq2 via DiffBind
diffbind deseq2 interactions
updated 4.0 years ago by • 0 • written 7.2 years ago by ▴ 60
0
votes
2
replies
1.3k
views
DiffBind PE data
diffbind paired-end reads
updated 4.2 years ago by ★ 5.2k • written 8.0 years ago by ▴ 60
0
votes
0
replies
748
views
Comment: C: Label points on DESeq2 MA plot with interval list
5.2 years ago rbronste ▴ 60
1
vote
2
replies
748
views
Label points on DESeq2 MA plot with interval list
deseq2 maplot annotation
updated 5.2 years ago by 43k • written 5.2 years ago by ▴ 60
1
vote
1
reply
760
views
diffBind volcano plot error
DiffBind volcano plot software error
5.2 years ago rbronste ▴ 60
2
votes
3
replies
1.8k
views
Filtering counts in SummarizedExperiment
diffbind matrix summarizedexperiment rangedCounts
updated 5.2 years ago by ★ 5.2k • written 5.3 years ago by ▴ 60
0
votes
1
reply
809
views
dba.count filter example in manual
diffbind
updated 5.2 years ago by ★ 5.2k • written 5.3 years ago by ▴ 60
0
votes
1
reply
1.1k
views
Comment: C: write.table of DESeq2 results broken down by LFC
5.2 years ago rbronste ▴ 60
0
votes
0
replies
1.1k
views
Comment: C: write.table of DESeq2 results broken down by LFC
5.2 years ago rbronste ▴ 60
1
vote
4
replies
1.1k
views
write.table of DESeq2 results broken down by LFC
deseq2
updated 5.2 years ago by 43k • written 5.2 years ago by ▴ 60
0
votes
0
replies
1.8k
views
Comment: C: Filtering counts in SummarizedExperiment
5.3 years ago rbronste ▴ 60
0
votes
0
replies
946
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm motifs jaspar meme motif analysis
6.1 years ago rbronste ▴ 60
0
votes
0
replies
1.5k
views
Comment: C: High normalized counts on DESeq2 MAplot
6.2 years ago rbronste ▴ 60
0
votes
0
replies
1.5k
views
Comment: C: High normalized counts on DESeq2 MAplot
6.2 years ago rbronste ▴ 60
0
votes
1
reply
1.5k
views
Comment: C: High normalized counts on DESeq2 MAplot
6.2 years ago rbronste ▴ 60
5
votes
8
replies
1.5k
views
High normalized counts on DESeq2 MAplot
deseq2 maplot
updated 6.2 years ago by 67k • written 6.2 years ago by ▴ 60
0
votes
1
reply
1.5k
views
Comment: C: High normalized counts on DESeq2 MAplot
6.2 years ago rbronste ▴ 60
0
votes
0
replies
584
views
Converting DESeq2 results to DiffBind object
deseq2 diffbind
6.2 years ago rbronste ▴ 60
0
votes
0
replies
1.4k
views
Comment: C: Split AME .tsv file into GRanges object or DataFrame
6.2 years ago rbronste ▴ 60
1
vote
2
replies
1.4k
views
Split AME .tsv file into GRanges object or DataFrame
meme ame motif dataframe granges
updated 6.2 years ago by ★ 11k • written 6.2 years ago by ▴ 60
0
votes
4
replies
1.1k
views
DESeq2 memory allocation question
deseq2 memory problem
updated 6.2 years ago by 43k • written 6.2 years ago by ▴ 60
0
votes
0
replies
1.1k
views
Comment: C: DESeq2 memory allocation question
6.2 years ago rbronste ▴ 60
0
votes
0
replies
1.1k
views
Comment: C: DESeq2 memory allocation question
6.2 years ago rbronste ▴ 60
0
votes
1
reply
1.2k
views
Comment: C: DESeq2 group comparison
6.3 years ago rbronste ▴ 60
0
votes
3
replies
1.2k
views
DESeq2 group comparison
deseq2 deseq differential binding analysis
updated 6.3 years ago by 43k • written 6.3 years ago by ▴ 60
0
votes
1
reply
660
views
DESeq2 relevel still gives negative log2FoldChange
deseq2
updated 6.4 years ago by 43k • written 6.4 years ago by ▴ 60
0
votes
0
replies
2.3k
views
Comment: C: DESeq2 baseMean from DiffBind summarizedExperiment
6.4 years ago rbronste ▴ 60
0
votes
1
reply
2.3k
views
Comment: C: DESeq2 baseMean from DiffBind summarizedExperiment
6.4 years ago rbronste ▴ 60
0
votes
1
reply
2.3k
views
Comment: C: DESeq2 baseMean from DiffBind summarizedExperiment
6.4 years ago rbronste ▴ 60
0
votes
1
reply
2.3k
views
Comment: C: DESeq2 baseMean from DiffBind summarizedExperiment
6.4 years ago rbronste ▴ 60
5
votes
9
replies
2.3k
views
DESeq2 baseMean from DiffBind summarizedExperiment
deseq2 diffbind basemean summarizedexperiment
6.4 years ago rbronste ▴ 60
0
votes
3
replies
1.1k
views
3x2 comparisons in DEseq - time (3 time points) and two treatments
deseq2 deseq rna-seq multiple comparisons
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 60
0
votes
1
reply
914
views
Most liked/utilized qPCR analysis package
qPCR
updated 6.6 years ago by 52k • written 6.6 years ago by ▴ 60
0
votes
0
replies
2.1k
views
Comment: C: DESeq2 design subcategories
6.9 years ago rbronste ▴ 60
0
votes
1
reply
2.1k
views
Comment: C: DESeq2 design subcategories
6.9 years ago rbronste ▴ 60
0
votes
0
replies
1.8k
views
Comment: C: DESeq2 design and stats question
7.0 years ago rbronste ▴ 60
0
votes
1
reply
1.8k
views
Comment: C: DESeq2 design and stats question
7.0 years ago rbronste ▴ 60
0
votes
1
reply
1.8k
views
Comment: C: DESeq2 design and stats question
7.0 years ago rbronste ▴ 60
4
votes
6
replies
1.8k
views
DESeq2 design and stats question
deseq2 differential binding analysis deseq atac-seq
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 60
0
votes
0
replies
1.5k
views
Comment: C: biomaRT biotype TFs only
7.0 years ago rbronste ▴ 60
0
votes
0
replies
1.5k
views
Comment: C: biomaRT biotype TFs only
7.0 years ago rbronste ▴ 60
1
vote
3
replies
1.5k
views
biomaRT biotype TFs only
biomart TF biotype ensembl mus musculus
updated 7.0 years ago by ★ 6.6k • written 7.0 years ago by ▴ 60
2
votes
1
reply
2.4k
views
Error in DESeq2 plotMA from object subset
deseq2 maplot subset
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 60
0
votes
1
reply
1.6k
views
Comment: C: GRanges object from gene list
7.0 years ago rbronste ▴ 60
2
votes
3
replies
1.6k
views
GRanges object from gene list
granges bed genomicranges genomeintervals deseq2
7.0 years ago rbronste ▴ 60
0
votes
0
replies
4.0k
views
Comment: C: DESeq2 results export padj sorted
7.0 years ago rbronste ▴ 60
0
votes
1
reply
4.0k
views
Comment: C: DESeq2 results export padj sorted
7.0 years ago rbronste ▴ 60
0
votes
1
reply
4.0k
views
Comment: C: DESeq2 results export padj sorted
7.0 years ago rbronste ▴ 60
0
votes
0
replies
4.0k
views
Comment: C: DESeq2 results export padj sorted
7.0 years ago rbronste ▴ 60
0
votes
1
reply
4.0k
views
Comment: C: DESeq2 results export padj sorted
7.0 years ago rbronste ▴ 60
144 results • Page 1 of 3
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