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normalization of POL2 ChIP-seq for the calculation of POL2 Pausing Ratios
edgeR deseq2 normalization
updated 8.3 years ago by ★ 29k • written 8.3 years ago by ▴ 670
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3.2k
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Comment: C: about MAFTOOLS and ComplexHeatmap
8.3 years ago Bogdan ▴ 670
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3.2k
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Comment: C: about MAFTOOLS and ComplexHeatmap
8.3 years ago Bogdan ▴ 670
2
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3
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3.2k
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about MAFTOOLS and ComplexHeatmap
complexheatmap maftools
updated 8.3 years ago by ▴ 90 • written 8.3 years ago by ▴ 670
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1.8k
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Comment: C: detecting of CNV in WGS/WES data
8.4 years ago Bogdan ▴ 670
2
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2
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1.8k
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detecting of CNV in WGS/WES data
CNV WGS WES
updated 8.4 years ago by ▴ 110 • written 8.4 years ago by ▴ 670
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1.9k
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Comment: C: about reshaping a data frame
8.5 years ago Bogdan ▴ 670
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705
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Comment: C: using edgeR or limma for 5C data normalization
8.5 years ago Bogdan ▴ 670
2
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2
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705
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using edgeR or limma for 5C data normalization
limma edgeR deseq2
updated 8.5 years ago by ★ 29k • written 8.5 years ago by ▴ 670
2
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2
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1.9k
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about reshaping a data frame
maftools complexheatmap
updated 8.5 years ago by ▴ 110 • written 8.5 years ago by ▴ 670
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0
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4.2k
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Comment: C: Error in GenomeInfoDb:::getDanglingSeqlevels
8.5 years ago Bogdan ▴ 670
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4.2k
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Answer: A: Error in GenomeInfoDb:::getDanglingSeqlevels
8.5 years ago Bogdan ▴ 670
2
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5
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4.2k
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Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
8.5 years ago Bogdan ▴ 670
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0
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4.2k
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Comment: C: Error in GenomeInfoDb:::getDanglingSeqlevels
8.5 years ago Bogdan ▴ 670
4
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2
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1.9k
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using cn.MOPS on WES data GERMLINE-TUMOR
cn.mops
8.5 years ago Bogdan ▴ 670
1
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0
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1.9k
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Answer: A: using cn.MOPS on WES data GERMLINE-TUMOR
8.5 years ago Bogdan ▴ 670
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0
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2.0k
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Comment: C: Oncoprint function in ComplexHeatmap
8.5 years ago Bogdan ▴ 670
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1
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2.0k
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Oncoprint function in ComplexHeatmap
complexheatmap
8.5 years ago Bogdan ▴ 670
3
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1
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1.5k
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R code for cn.mops -- if a chromosome does not have CNV ?
cn.mops referencecn.mops
updated 8.6 years ago by ▴ 540 • written 8.8 years ago by ▴ 670
3
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5
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2.0k
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R code for cn.mops
cn.mops
updated 2.7 years ago by • 0 • written 8.8 years ago by ▴ 670
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0
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3.5k
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Comment: C: extracting Allele Read Counts - part2
8.7 years ago Bogdan ▴ 670
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1
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3.5k
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Comment: C: extracting Allele Read Counts - part2
8.7 years ago Bogdan ▴ 670
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1
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3.5k
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Comment: C: extracting Allele Read Counts - part2
8.7 years ago Bogdan ▴ 670
2
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6
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3.5k
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extracting Allele Read Counts - part2
rsamtools variantannotation
updated 8.7 years ago by 68k • written 8.7 years ago by ▴ 670
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2.8k
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Comment: C: about VCF and BAM files
8.7 years ago Bogdan ▴ 670
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0
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3.7k
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Comment: C: an error in ggbio: "Breaks and labels are different lengths"
8.7 years ago Bogdan ▴ 670
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1
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3.7k
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an error in ggbio: "Breaks and labels are different lengths"
ggbio ggplot2
8.7 years ago Bogdan ▴ 670
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0
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3.3k
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Comment: C: extracting Allele Read Counts
8.7 years ago Bogdan ▴ 670
0
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0
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3.3k
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Comment: C: extracting Allele Read Counts
8.7 years ago Bogdan ▴ 670
5
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6
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3.3k
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extracting Allele Read Counts
rsamtools vcf
8.7 years ago Bogdan ▴ 670
0
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2
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3.3k
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Answer: A: extracting Allele Read Counts
8.7 years ago Bogdan ▴ 670
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0
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1.0k
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an error in TitanCNA
TitanCNA HMMcopy
8.7 years ago Bogdan ▴ 670
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0
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2.6k
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Comment: C: annotation of SV (Structural Variants)
8.7 years ago Bogdan ▴ 670
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1
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2.6k
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Comment: C: annotation of SV (Structural Variants)
8.7 years ago Bogdan ▴ 670
1
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3
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2.6k
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annotation of SV (Structural Variants)
variantannotation annotationhub
8.7 years ago Bogdan ▴ 670
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0
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2.0k
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Comment: C: filtering VCF files
8.7 years ago Bogdan ▴ 670
3
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2
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2.0k
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filtering VCF files
variantannotation variantfiltering
updated 8.7 years ago by ★ 11k • written 8.7 years ago by ▴ 670
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0
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1.2k
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Comment: C: bias correction (an example from ChIP-seq)
8.8 years ago Bogdan ▴ 670
0
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1
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1.2k
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Answer: A: bias correction (an example from ChIP-seq)
8.8 years ago Bogdan ▴ 670
4
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3
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1.2k
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bias correction (an example from ChIP-seq)
normalization limma edgeR DEseq2
8.8 years ago Bogdan ▴ 670
8
votes
1
reply
11k
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extracting the genes associated with the clusters
heatmap.2 pheatmap complexheatmap heatplus
updated 8.8 years ago by ▴ 690 • written 8.8 years ago by ▴ 670
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0
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5.4k
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Answer: A: heatmap of genes based on enriched GO categories
8.8 years ago Bogdan ▴ 670
9
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8
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5.4k
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heatmap of genes based on enriched GO categories
goexpress gopro
8.8 years ago Bogdan ▴ 670
1
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1
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5.4k
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Answer: A: heatmap of genes based on enriched GO categories
8.8 years ago Bogdan ▴ 670
0
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0
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5.4k
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Comment: A: heatmap of genes based on enriched GO categories
8.8 years ago Bogdan ▴ 670
0
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1
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5.4k
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Comment: C: heatmap of genes based on enriched GO categories
8.8 years ago Bogdan ▴ 670
0
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0
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1.3k
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Comment: C: statistical tests to show the specificity of a phenomenon (eg increase in H3K27m
8.8 years ago Bogdan ▴ 670
3
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2
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1.3k
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statistical tests to show the specificity of a phenomenon (eg increase in H3K27me3 mark)
chip-seq
updated 8.8 years ago by ★ 13k • written 8.8 years ago by ▴ 670
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0
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3.0k
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Comment: C: (batch) corrections of RNA-seq data: integrating LIMMA and SVA
8.8 years ago Bogdan ▴ 670
3
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2
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3.0k
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(batch) corrections of RNA-seq data: integrating LIMMA and SVA
limma sva svaseq
updated 8.8 years ago by ★ 29k • written 8.8 years ago by ▴ 670
429 results • Page 5 of 9
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