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0
votes
1
reply
416
views
Comment:
Comment: locateVariant from VariantAnnotation returns wrong results
4 months ago
nhaus
▴ 10
0
votes
1
reply
416
views
Comment:
Comment: locateVariant from VariantAnnotation returns wrong results
4 months ago
nhaus
▴ 10
0
votes
5
replies
416
views
locateVariant from VariantAnnotation returns wrong results
VariantAnnotation
locateVariant
updated 4 months ago by
James W. MacDonald
65k • written 4 months ago by
nhaus
▴ 10
0
votes
3
replies
1.2k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 11 months ago by
nhaus
▴ 10
1
vote
1
reply
615
views
Pseudobulk running all groups together vs subsetting first
DESeq2
edgeR
SingleCell
updated 13 months ago by
Wolfgang Huber
★ 13k • written 13 months ago by
nhaus
▴ 10
0
votes
1
reply
2.0k
views
Comment:
Comment: Implementation of the "original" GSEA algorithm in R
15 months ago
nhaus
▴ 10
0
votes
1
reply
554
views
GSA type of input data
GSEA
GSA
vst
updated 15 months ago by
Michael Love
41k • written 15 months ago by
nhaus
▴ 10
7
votes
6
replies
2.0k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler
GSEA
fgsea
updated 15 months ago by
Gordon Smyth
50k • written 15 months ago by
nhaus
▴ 10
2
votes
1
reply
1.2k
views
removeBatchEffect: Coefficients not estimable when using "batch matrix" for `covariates` argument.
limma
BatchEffect
updated 22 months ago by
Gordon Smyth
50k • written 22 months ago by
nhaus
▴ 10
2
votes
3
replies
1.5k
views
Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
AnnotationDbi
updated 7 months ago by
James W. MacDonald
65k • written 22 months ago by
nhaus
▴ 10
0
votes
0
replies
1.6k
views
Comment:
Comment: Get corresponding gene id for probe id from Affymetrix array
22 months ago
nhaus
▴ 10
0
votes
1
reply
1.6k
views
Comment:
Comment: Get corresponding gene id for probe id from Affymetrix array
22 months ago
nhaus
▴ 10
2
votes
5
replies
1.6k
views
Get corresponding gene id for probe id from Affymetrix array
AnnotationDbi
Microarray
22 months ago
nhaus
▴ 10
0
votes
0
replies
507
views
Using geNetClassifier with RNA seq data
geNetClassifier
Normalization
24 months ago
nhaus
▴ 10
0
votes
1
reply
1.8k
views
Comment:
Comment: AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is requi
2.0 years ago
nhaus
▴ 10
0
votes
2
replies
1.8k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub
Install
updated 2.0 years ago by
shepherl
3.8k • written 2.0 years ago by
nhaus
▴ 10
0
votes
1
reply
6.0k
views
Comment:
Comment: GSEA many significant gene sets despite no differentially expressed genes
2.0 years ago
nhaus
▴ 10
0
votes
1
reply
6.0k
views
Comment:
Comment: GSEA many significant gene sets despite no differentially expressed genes
2.0 years ago
nhaus
▴ 10
0
votes
1
reply
6.0k
views
Comment:
Comment: GSEA many significant gene sets despite no differentially expressed genes
2.0 years ago
nhaus
▴ 10
9
votes
13
replies
6.0k
views
GSEA many significant gene sets despite no differentially expressed genes
GSEA
GeneSetEnrichment
DifferentialExpression
updated 7 weeks ago by
ATpoint
★ 4.0k • written 2.0 years ago by
nhaus
▴ 10
0
votes
1
reply
6.0k
views
Comment:
Comment: GSEA many significant gene sets despite no differentially expressed genes
2.0 years ago
nhaus
▴ 10
0
votes
0
replies
852
views
Comment:
Comment: Including squared covariates to account for non-linear dependencies in different
2.1 years ago
nhaus
▴ 10
2
votes
3
replies
852
views
Including squared covariates to account for non-linear dependencies in differential gene expression analysis
limma
DifferentialExpression
2.1 years ago
nhaus
▴ 10
1
vote
1
reply
997
views
How to determine if limma can adjust for batch effect
BatchEffect
limma
sva
DifferentialExpression
updated 2.1 years ago by
ATpoint
★ 4.0k • written 2.1 years ago by
nhaus
▴ 10
0
votes
0
replies
1.6k
views
Comment:
Comment: What to do if covariates in design matrix of limma are confounded
2.1 years ago
nhaus
▴ 10
0
votes
2
replies
1.6k
views
Comment:
Comment: What to do if covariates in design matrix of limma are confounded
2.1 years ago
nhaus
▴ 10
4
votes
5
replies
1.6k
views
What to do if covariates in design matrix of limma are confounded
limma
DifferentialExpression
updated 23 months ago by
Sneha
• 0 • written 2.1 years ago by
nhaus
▴ 10
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