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questions
0
votes
0
replies
554
views
Displaying large image stacks (e.g. from multiplexed immunohistochemistry) using shiny and EBImage
shiny
EBImage
21 months ago
Wolfgang Huber
★ 13k
3
votes
3
replies
2.0k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
updated 14 months ago by
Mike Smith
★ 6.5k • written 2.4 years ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
4.3k
views
Conversion to SingleCellExperiment from Seurat objects
Seurat
SingleCellExperiment
5.9 years ago
Wolfgang Huber
★ 13k
8
votes
2
replies
3.0k
views
exprs function - clash with dplyr
exprs
dplyr
Biobase
5.9 years ago
Wolfgang Huber
★ 13k
5
votes
3
replies
1.5k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 7.4 years ago by
Lucas Schiffer
▴ 240 • written 7.5 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
633
views
ECCB workshop call for abstracts: "Analysis of Differential Isoform Usage by RNA-seq: Statistical Methodologies and Open Software"
9.9 years ago
Wolfgang Huber
★ 13k
0
votes
4
replies
1.0k
views
Warning message while trying to install Bioconductor
updated 9.9 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.9 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
1.2k
views
in-group missing arrayQualityMetrics()
arrayQualityMetrics
arrayQualityMetrics
9.9 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.1k
views
Course "CSAMA 2014" Computational Statistics for Genome Biology
Annotation
Classification
Clustering
Annotation
Classification
Clustering
10.0 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.2k
views
total count filter cutoff
Transcription
Transcription
updated 10.0 years ago by
Mahnaz Kiani
▴ 20 • written 10.0 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
1.1k
views
CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
Sequencing
Annotation
Classification
Clustering
Sequencing
Annotation
Classification
10.2 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
732
views
error in DEXSeq fitDispersionFunction()
GO
DEXSeq
GO
DEXSeq
10.2 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
766
views
arrayQualityMetrics does not produce interactive plots
GLAD
GLAD
10.4 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.7k
views
BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics
BiocGenerics
10.5 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.5k
views
Bioinformatics Position in Oncology / Multiple Myeloma, Univ. Heidelberg
Sequencing
Cancer
Sequencing
Cancer
10.6 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
1.0k
views
confusing P-value of one gene
edgeR
DESeq2
edgeR
DESeq2
updated 10.7 years ago by
Gordon Smyth
50k • written 10.7 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
765
views
EMBO Practical Course on Bioinformatics and statistics for large-scale data: 17-22 Nov @ BGI
10.9 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.8k
views
Postdoc RNA-Interactome at EMBL
Sequencing
Sequencing
11.0 years ago
Wolfgang Huber
★ 13k
0
votes
3
replies
1.1k
views
rhd5 reading variable-length strings
rhdf5
rhdf5
updated 11.0 years ago by
Steven
▴ 110 • written 11.0 years ago by
Wolfgang Huber
★ 13k
0
votes
5
replies
3.1k
views
DESeq2
Normalization
Classification
Clustering
DESeq
cqn
DESeq2
Normalization
Classification
cqn
updated 11.1 years ago by
Michael Love
41k • written 11.1 years ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
2.0k
views
illegal operand when I run DEXSeq
DEXSeq
DEXSeq
updated 11.2 years ago by
Ou, Jianhong
★ 1.3k • written 11.2 years ago by
Wolfgang Huber
★ 13k
0
votes
6
replies
2.0k
views
Log transformation and left censoring
limma
edgeR
DESeq
limma
edgeR
DESeq
updated 11.2 years ago by
Gordon Smyth
50k • written 11.2 years ago by
Wolfgang Huber
★ 13k
0
votes
2
replies
1.2k
views
pam implementation
pamr
pamr
updated 11.5 years ago by
John Lande
▴ 280 • written 11.5 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
719
views
unbiased filtering of paired dataset
11.5 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.1k
views
4 Positions at EMBL
Sequencing
Network
Sequencing
Network
11.7 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
612
views
DEseq and FDR correction
11.8 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.6k
views
Job offer: Postdoc Comp. Biol. of RNA-protein interactions, data analysis of MS and HTS at EMBL Heidelberg
Sequencing
Sequencing
12.0 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.1k
views
arrayQualityMetrics error with MAList
Normalization
convert
arrayQualityMetrics
Normalization
convert
arrayQualityMetrics
12.1 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.1k
views
DESeq countDataSets and arrayQualityMetrics (was: Re: DESeq estimateDispersion options for lower depth miRNA-seq)
Genetics
Biobase
arrayQualityMetrics
DESeq
Genetics
Biobase
arrayQualityMetrics
DESeq
12.1 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.3k
views
arrayQualityMetrics package - bugs and errors
limma
affyPLM
convert
arrayQualityMetrics
limma
affyPLM
convert
arrayQualityMetrics
12.2 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
770
views
error in DEXSeq fitDispersionFunction()
DEXSeq
DEXSeq
updated 12.4 years ago by
Georg Otto
▴ 120 • written 12.4 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
927
views
Conference announcement: Omics and Personalised Health, EMBL Heidelberg, 16-18 February 2012
genomes
genomes
12.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.7k
views
Postdoctoral positions at EMBL
Sequencing
Genetics
GO
Network
Cancer
genomes
Sequencing
Genetics
GO
Network
Cancer
12.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
904
views
Advanced Course R Programming and Development - EMBL Heidelberg - 28.-29. November 2011
12.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
888
views
how to make an MA plot with single color agilent microarray?
Microarray
limma
arrayQualityMetrics
Microarray
limma
arrayQualityMetrics
12.8 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
917
views
DESeq - fitNbinomGLMs - Error: NA/NaN/Inf in foreign function call
12.8 years ago
Wolfgang Huber
★ 13k
0
votes
3
replies
1.5k
views
problem with biomaRt package using mart "snps", dataset "hsapiens_structvar", attribute "description"
biomaRt
biomaRt
updated 13.1 years ago by
Steffen Durinck
▴ 540 • written 13.1 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
683
views
announcing a new version of arrayQualityMetrics in the development branch
GO
arrayQualityMetrics
GO
arrayQualityMetrics
13.2 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
606
views
What's the best way to make svg device on Windows available
updated 13.3 years ago by
Michael Lawrence
★ 11k • written 13.3 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
673
views
ESD files from Beckman
convert
convert
13.4 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
737
views
Talks (PDFs) from the Bioconductor Developer Meeting Europe in Heidelberg on 2010-11-17/18
13.4 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
751
views
new arrayQualityMetrics 3.2.3 in release - was: arrayQualityMetrics 3.2.0 in Bioc release 2.7 is broken
arrayQualityMetrics
arrayQualityMetrics
13.5 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
872
views
arrayQualityMetrics 3.2.0 in Bioc release 2.7 is broken
updated 13.5 years ago by
Mike Walter
▴ 230 • written 13.5 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
665
views
Bioconductor Developer Meeting Europe - 17.-18. 11. 2010
Proteomics
Proteomics
13.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
904
views
Bioconductor Developer Meeting Europe - 17.-18. 11. 2010
13.7 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
777
views
browseURL
updated 13.7 years ago by
Cristobal Fresno RodrÃguez
▴ 370 • written 13.7 years ago by
Wolfgang Huber
★ 13k
0
votes
2
replies
1.1k
views
get full variance per gene from DESeq
DESeq
DESeq
updated 13.7 years ago by
Graham Thomas
▴ 20 • written 13.7 years ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
848
views
arrayQualityMetrics and Bioconductor Case Studies
Microarray
probe
Microarray
probe
updated 13.7 years ago by
Chintanu
▴ 310 • written 13.7 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
923
views
biomaRt problem
biomaRt
biomaRt
13.7 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
774
views
DESeq question correlation
DESeq
DESeq
13.7 years ago
Wolfgang Huber
★ 13k
137 results • Page
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