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0
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566
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Displaying large image stacks (e.g. from multiplexed immunohistochemistry) using shiny and EBImage
shiny EBImage
22 months ago Wolfgang Huber ★ 13k
3
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3
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2.0k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown suppressWarning warning
updated 15 months ago by ★ 6.5k • written 2.5 years ago by ★ 13k
0
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1
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4.4k
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Conversion to SingleCellExperiment from Seurat objects
Seurat SingleCellExperiment
6.0 years ago Wolfgang Huber ★ 13k
8
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2
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3.0k
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exprs function - clash with dplyr
exprs dplyr Biobase
6.0 years ago Wolfgang Huber ★ 13k
5
votes
3
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1.5k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub curatedMetagenomicData
updated 7.5 years ago by ▴ 240 • written 7.5 years ago by ★ 13k
0
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0
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641
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ECCB workshop call for abstracts: "Analysis of Differential Isoform Usage by RNA-seq: Statistical Methodologies and Open Software"
9.9 years ago Wolfgang Huber ★ 13k
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4
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1.0k
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Warning message while trying to install Bioconductor
updated 10.0 years ago by ★ 6.5k • written 10.0 years ago by ★ 13k
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0
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1.2k
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in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
10.0 years ago Wolfgang Huber ★ 13k
0
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0
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1.1k
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Course "CSAMA 2014" Computational Statistics for Genome Biology
Annotation Classification Clustering Annotation Classification Clustering
10.0 years ago Wolfgang Huber ★ 13k
0
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1
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1.2k
views
total count filter cutoff
Transcription Transcription
updated 10.0 years ago by ▴ 20 • written 10.0 years ago by ★ 13k
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0
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1.1k
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CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
Sequencing Annotation Classification Clustering Sequencing Annotation Classification
10.2 years ago Wolfgang Huber ★ 13k
0
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0
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735
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error in DEXSeq fitDispersionFunction()
GO DEXSeq GO DEXSeq
10.3 years ago Wolfgang Huber ★ 13k
0
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0
replies
774
views
arrayQualityMetrics does not produce interactive plots
GLAD GLAD
10.4 years ago Wolfgang Huber ★ 13k
0
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0
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1.8k
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BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics BiocGenerics
10.6 years ago Wolfgang Huber ★ 13k
0
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0
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1.5k
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Bioinformatics Position in Oncology / Multiple Myeloma, Univ. Heidelberg
Sequencing Cancer Sequencing Cancer
10.7 years ago Wolfgang Huber ★ 13k
0
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2
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1.0k
views
confusing P-value of one gene
edgeR DESeq2 edgeR DESeq2
updated 10.7 years ago by 50k • written 10.7 years ago by ★ 13k
0
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0
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771
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EMBO Practical Course on Bioinformatics and statistics for large-scale data: 17-22 Nov @ BGI
10.9 years ago Wolfgang Huber ★ 13k
0
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0
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1.8k
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Postdoc RNA-Interactome at EMBL
Sequencing Sequencing
11.1 years ago Wolfgang Huber ★ 13k
0
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3
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1.1k
views
rhd5 reading variable-length strings
rhdf5 rhdf5
updated 11.1 years ago by ▴ 110 • written 11.1 years ago by ★ 13k
0
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5
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3.2k
views
DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 11.2 years ago by 42k • written 11.2 years ago by ★ 13k
0
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1
reply
2.0k
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illegal operand when I run DEXSeq
DEXSeq DEXSeq
updated 11.2 years ago by ★ 1.3k • written 11.2 years ago by ★ 13k
0
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6
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2.0k
views
Log transformation and left censoring
limma edgeR DESeq limma edgeR DESeq
updated 11.3 years ago by 50k • written 11.3 years ago by ★ 13k
0
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2
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1.2k
views
pam implementation
pamr pamr
updated 11.5 years ago by ▴ 280 • written 11.6 years ago by ★ 13k
0
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0
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734
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unbiased filtering of paired dataset
11.6 years ago Wolfgang Huber ★ 13k
0
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0
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1.1k
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4 Positions at EMBL
Sequencing Network Sequencing Network
11.8 years ago Wolfgang Huber ★ 13k
0
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0
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616
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DEseq and FDR correction
11.9 years ago Wolfgang Huber ★ 13k
0
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0
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1.6k
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Job offer: Postdoc Comp. Biol. of RNA-protein interactions, data analysis of MS and HTS at EMBL Heidelberg
Sequencing Sequencing
12.1 years ago Wolfgang Huber ★ 13k
0
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0
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1.1k
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arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
12.1 years ago Wolfgang Huber ★ 13k
0
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0
replies
1.1k
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DESeq countDataSets and arrayQualityMetrics (was: Re: DESeq estimateDispersion options for lower depth miRNA-seq)
Genetics Biobase arrayQualityMetrics DESeq Genetics Biobase arrayQualityMetrics DESeq
12.1 years ago Wolfgang Huber ★ 13k
0
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0
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1.3k
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arrayQualityMetrics package - bugs and errors
limma affyPLM convert arrayQualityMetrics limma affyPLM convert arrayQualityMetrics
12.2 years ago Wolfgang Huber ★ 13k
0
votes
2
replies
780
views
error in DEXSeq fitDispersionFunction()
DEXSeq DEXSeq
updated 12.5 years ago by ▴ 120 • written 12.5 years ago by ★ 13k
0
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0
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936
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Conference announcement: Omics and Personalised Health, EMBL Heidelberg, 16-18 February 2012
genomes genomes
12.6 years ago Wolfgang Huber ★ 13k
0
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0
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1.7k
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Postdoctoral positions at EMBL
Sequencing Genetics GO Network Cancer genomes Sequencing Genetics GO Network Cancer
12.6 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
911
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Advanced Course R Programming and Development - EMBL Heidelberg - 28.-29. November 2011
12.7 years ago Wolfgang Huber ★ 13k
0
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0
replies
901
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how to make an MA plot with single color agilent microarray?
Microarray limma arrayQualityMetrics Microarray limma arrayQualityMetrics
12.9 years ago Wolfgang Huber ★ 13k
0
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0
replies
924
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DESeq - fitNbinomGLMs - Error: NA/NaN/Inf in foreign function call
12.9 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
1.5k
views
problem with biomaRt package using mart "snps", dataset "hsapiens_structvar", attribute "description"
biomaRt biomaRt
updated 13.1 years ago by ▴ 540 • written 13.1 years ago by ★ 13k
0
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0
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687
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announcing a new version of arrayQualityMetrics in the development branch
GO arrayQualityMetrics GO arrayQualityMetrics
13.3 years ago Wolfgang Huber ★ 13k
0
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2
replies
615
views
What's the best way to make svg device on Windows available
updated 13.3 years ago by ★ 11k • written 13.3 years ago by ★ 13k
0
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0
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682
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ESD files from Beckman
convert convert
13.4 years ago Wolfgang Huber ★ 13k
0
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0
replies
743
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Talks (PDFs) from the Bioconductor Developer Meeting Europe in Heidelberg on 2010-11-17/18
13.5 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
772
views
new arrayQualityMetrics 3.2.3 in release - was: arrayQualityMetrics 3.2.0 in Bioc release 2.7 is broken
arrayQualityMetrics arrayQualityMetrics
13.5 years ago Wolfgang Huber ★ 13k
0
votes
2
replies
884
views
arrayQualityMetrics 3.2.0 in Bioc release 2.7 is broken
updated 13.6 years ago by ▴ 230 • written 13.6 years ago by ★ 13k
0
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0
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671
views
Bioconductor Developer Meeting Europe - 17.-18. 11. 2010
Proteomics Proteomics
13.6 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
910
views
Bioconductor Developer Meeting Europe - 17.-18. 11. 2010
13.8 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
789
views
browseURL
updated 13.8 years ago by ▴ 370 • written 13.8 years ago by ★ 13k
0
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2
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1.1k
views
get full variance per gene from DESeq
DESeq DESeq
updated 13.8 years ago by ▴ 20 • written 13.8 years ago by ★ 13k
0
votes
1
reply
859
views
arrayQualityMetrics and Bioconductor Case Studies
Microarray probe Microarray probe
updated 13.8 years ago by ▴ 310 • written 13.8 years ago by ★ 13k
0
votes
0
replies
934
views
biomaRt problem
biomaRt biomaRt
13.8 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
780
views
DESeq question correlation
DESeq DESeq
13.8 years ago Wolfgang Huber ★ 13k
137 results • Page 1 of 3
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