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0
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annotate peaks using a custom genome
ChIPSeq annotate ChIPpeakAnno
updated 2.5 years ago by ▴ 70 • written 2.6 years ago by ▴ 140
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0
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1.3k
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Comment: Comment: annotate peaks using a custom genome
2.5 years ago C T ▴ 140
0
votes
3
replies
1.6k
views
DiffBind custom normalization factor
diffbind
updated 7 months ago by • 0 • written 5.6 years ago by ▴ 140
4
votes
5
replies
2.9k
views
emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling
updated 5.0 years ago by ★ 29k • written 6.2 years ago by ▴ 140
1
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0
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3.0k
views
Comment: C: counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
5.2 years ago C T ▴ 140
7
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9
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3.0k
views
counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
chippeakanno
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by ▴ 140
1
vote
0
replies
3.0k
views
Comment: C: counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
5.2 years ago C T ▴ 140
1
vote
1
reply
3.0k
views
Comment: C: counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
5.2 years ago C T ▴ 140
1
vote
1
reply
3.0k
views
Comment: C: counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
5.2 years ago C T ▴ 140
0
votes
0
replies
1.2k
views
Comment: C: how to suppress makeVennDiagram plot
5.3 years ago C T ▴ 140
2
votes
2
replies
1.2k
views
how to suppress makeVennDiagram plot
ChIPpeakAnno
5.3 years ago C T ▴ 140
1
vote
3
replies
1.7k
views
csaw differential binding visualization
csaw
updated 5.6 years ago by ★ 29k • written 5.6 years ago by ▴ 140
0
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0
replies
2.8k
views
Comment: C: DiffBind for ATAC-seq -- bFullLibrarySize parameter
5.7 years ago C T ▴ 140
0
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1
reply
1.2k
views
Comment: C: how to draw multiple heatmap from GeneOverlap
5.8 years ago C T ▴ 140
0
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3
replies
1.2k
views
how to draw multiple heatmap from GeneOverlap
GeneOverlap multiple figures heatmap
updated 5.8 years ago by 68k • written 5.8 years ago by ▴ 140
0
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0
replies
3.0k
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Comment: C: Error in creating BSGenome package
6.1 years ago C T ▴ 140
0
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1
reply
2.9k
views
Comment: C: emptyDrops identified less non-empty cells with lower total UMI counts?
6.2 years ago C T ▴ 140
1
vote
1
reply
3.1k
views
Advice on correcting for batch effect using DESeq2
deseq2
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 140
0
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0
replies
4.5k
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Comment: C: Dispersion fit and p-value distributions
7.1 years ago C T ▴ 140
0
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0
replies
4.5k
views
Comment: C: Dispersion fit and p-value distributions
7.1 years ago C T ▴ 140
7
votes
9
replies
4.5k
views
Dispersion fit and p-value distributions
deseq2 rnaseq fdrtool
updated 7.1 years ago by ★ 7.9k • written 7.1 years ago by ▴ 140
0
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2
replies
4.5k
views
Comment: C: Dispersion fit and p-value distributions
7.1 years ago C T ▴ 140
0
votes
1
reply
3.7k
views
Comment: C: DESeq2 PCA plot on fitted values
7.4 years ago C T ▴ 140
0
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0
replies
3.7k
views
Comment: C: DESeq2 PCA plot on fitted values
7.4 years ago C T ▴ 140
6
votes
5
replies
3.4k
views
reads alignment statistics
rsubread bioconductor
updated 8.1 years ago by 16k • written 8.2 years ago by ▴ 140
1
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0
replies
3.4k
views
Comment: C: reads alignment statistics
8.2 years ago C T ▴ 140
0
votes
1
reply
3.4k
views
Comment: C: reads alignment statistics
8.2 years ago C T ▴ 140
0
votes
1
reply
2.3k
views
PCR bottleneck coefficient (PBC)
chipqc
updated 8.3 years ago by ★ 5.2k • written 8.3 years ago by ▴ 140
0
votes
1
reply
3.7k
views
Comment: C: Technical details of DiffBind correlation analysis
8.4 years ago C T ▴ 140
0
votes
0
replies
1.8k
views
Comment: C: ChIPQC plotCoverageHist() and plotCC() not showing inputs
8.4 years ago C T ▴ 140
0
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0
replies
1.4k
views
Comment: C: ChIPQC plots for input samples
8.4 years ago C T ▴ 140
0
votes
2
replies
1.4k
views
ChIPQC plots for input samples
chipqc
updated 8.4 years ago by ▴ 420 • written 8.4 years ago by ▴ 140
0
votes
3
replies
1.7k
views
ChIPQC reading more samples that it should
chipqc
8.4 years ago C T ▴ 140
0
votes
1
reply
1.7k
views
Answer: A: ChIPQC reading more samples that it should
8.4 years ago C T ▴ 140
0
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0
replies
3.4k
views
Comment: C: ChIPseeker annotatePeak definition
9.2 years ago C T ▴ 140
0
votes
2
replies
3.4k
views
ChIPseeker annotatePeak definition
chipseeker
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 140
0
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0
replies
4.5k
views
Comment: C: nearest genes using TxDb.Hsapiens.UCSC.hg19
9.4 years ago C T ▴ 140
0
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1
reply
4.5k
views
Comment: C: nearest genes using TxDb.Hsapiens.UCSC.hg19
9.4 years ago C T ▴ 140
0
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0
replies
4.5k
views
Comment: C: nearest genes using TxDb.Hsapiens.UCSC.hg19
9.4 years ago C T ▴ 140
0
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0
replies
4.5k
views
Comment: C: nearest genes using TxDb.Hsapiens.UCSC.hg19
9.4 years ago C T ▴ 140
5
votes
15
replies
4.5k
views
nearest genes using TxDb.Hsapiens.UCSC.hg19
txdb.hsapiens.ucsc.hg19.knowngene ChIPpeakAnno
updated 9.4 years ago by ★ 4.3k • written 9.4 years ago by ▴ 140
0
votes
1
reply
4.5k
views
Comment: C: nearest genes using TxDb.Hsapiens.UCSC.hg19
9.4 years ago C T ▴ 140
0
votes
0
replies
4.5k
views
Comment: C: nearest genes using TxDb.Hsapiens.UCSC.hg19
9.4 years ago C T ▴ 140
0
votes
1
reply
4.5k
views
Comment: C: nearest genes using TxDb.Hsapiens.UCSC.hg19
9.4 years ago C T ▴ 140
0
votes
2
replies
4.5k
views
Answer: A: nearest genes using TxDb.Hsapiens.UCSC.hg19
9.4 years ago C T ▴ 140
0
votes
0
replies
1.7k
views
get precursor mirna from mature mirna
bioconductor mirna mir mirbase.db
9.8 years ago C T ▴ 140
0
votes
0
replies
3.1k
views
Comment: C: mzR crashes R
12.6 years ago C T ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: mzR crashes R
12.6 years ago C T ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: mzR crashes R
12.6 years ago C T ▴ 140
0
votes
0
replies
2.0k
views
Comment: C: installing Rdisop
12.6 years ago C T ▴ 140
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