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annotate peaks using a custom genome
ChIPSeq
annotate
ChIPpeakAnno
updated 12 months ago by
Kai Hu
▴ 70 • written 12 months ago by
C T
▴ 140
0
votes
2
replies
638
views
DiffBind custom normalization factor
diffbind
updated 3.5 years ago by
Rory Stark
★ 5.2k • written 4.1 years ago by
C T
▴ 140
4
votes
5
replies
2.0k
views
emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils
scRNA-seq
emptyDrops
simplesinglecell
cell calling
updated 3.5 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
C T
▴ 140
7
votes
9
replies
1.8k
views
counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
chippeakanno
updated 3.6 years ago by
Julie Zhu
★ 4.3k • written 3.7 years ago by
C T
▴ 140
2
votes
2
replies
796
views
how to suppress makeVennDiagram plot
ChIPpeakAnno
3.7 years ago
C T
▴ 140
1
vote
3
replies
1.1k
views
csaw differential binding visualization
csaw
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
C T
▴ 140
0
votes
3
replies
686
views
how to draw multiple heatmap from GeneOverlap
GeneOverlap
multiple figures
heatmap
updated 4.2 years ago by
James W. MacDonald
65k • written 4.2 years ago by
C T
▴ 140
0
votes
1
reply
1.7k
views
Advice on correcting for batch effect using DESeq2
deseq2
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
C T
▴ 140
7
votes
9
replies
3.0k
views
Dispersion fit and p-value distributions
deseq2
rnaseq
fdrtool
updated 5.5 years ago by
Ryan C. Thompson
★ 7.9k • written 5.5 years ago by
C T
▴ 140
6
votes
5
replies
2.4k
views
reads alignment statistics
rsubread
bioconductor
updated 6.6 years ago by
Hervé Pagès
16k • written 6.6 years ago by
C T
▴ 140
0
votes
1
reply
2.0k
views
PCR bottleneck coefficient (PBC)
chipqc
updated 6.8 years ago by
Rory Stark
★ 5.2k • written 6.8 years ago by
C T
▴ 140
0
votes
2
replies
1.0k
views
ChIPQC plots for input samples
chipqc
updated 6.8 years ago by
Thomas Carroll
▴ 420 • written 6.8 years ago by
C T
▴ 140
0
votes
3
replies
1.2k
views
ChIPQC reading more samples that it should
chipqc
6.8 years ago
C T
▴ 140
0
votes
2
replies
2.4k
views
ChIPseeker annotatePeak definition
chipseeker
updated 7.6 years ago by
Guangchuang Yu
★ 1.2k • written 7.6 years ago by
C T
▴ 140
5
votes
15
replies
3.3k
views
nearest genes using TxDb.Hsapiens.UCSC.hg19
txdb.hsapiens.ucsc.hg19.knowngene
ChIPpeakAnno
updated 7.9 years ago by
Julie Zhu
★ 4.3k • written 7.9 years ago by
C T
▴ 140
0
votes
0
replies
1.4k
views
get precursor mirna from mature mirna
bioconductor
mirna
mir
mirbase.db
8.3 years ago
C T
▴ 140
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