Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.4k
views
Comment: Comment: IsoformSwitchAnalyzeR: What are the SV values created in design matrix?
8 months ago k.vitting.seerup ▴ 120
0
votes
1
reply
1.4k
views
Answer: Answer: IsoformSwitchAnalyzeR: What are the SV values created in design matrix?
8 months ago k.vitting.seerup ▴ 120
0
votes
0
replies
1.7k
views
Comment: Comment: Error in Create switchAnalyzeRlist
20 months ago k.vitting.seerup ▴ 120
0
votes
1
reply
1.7k
views
Comment: Comment: Error in Create switchAnalyzeRlist
20 months ago k.vitting.seerup ▴ 120
0
votes
1
reply
1.7k
views
Comment: Comment: Error in Create switchAnalyzeRlist
20 months ago k.vitting.seerup ▴ 120
0
votes
0
replies
858
views
Comment: Comment: IsoformSwitchAnalyzeR package on mouse data
20 months ago k.vitting.seerup ▴ 120
2
votes
2
replies
1.7k
views
Answer: Answer: Error in Create switchAnalyzeRlist
20 months ago k.vitting.seerup ▴ 120
0
votes
1
reply
1.1k
views
Comment: Comment: Joint disperstion estimation for DEXSeq and DESeq2
2.3 years ago k.vitting.seerup ▴ 120
3
votes
3
replies
1.1k
views
Joint disperstion estimation for DEXSeq and DESeq2
DESeq2 DEXseq
updated 2.3 years ago by 41k • written 2.3 years ago by ▴ 120
0
votes
0
replies
829
views
Comment: Comment: Turn of GSVA filtering for method ssGSEA
2.8 years ago k.vitting.seerup ▴ 120
2
votes
2
replies
829
views
Turn of GSVA filtering for method ssGSEA
GSVA
2.8 years ago k.vitting.seerup ▴ 120
0
votes
0
replies
1.5k
views
Answer: Answer: Differential Transcript Usage: complex factorial design
2.9 years ago k.vitting.seerup ▴ 120
0
votes
0
replies
833
views
Answer: Answer: IsoformSwitchAnalyzeR: pvalues before FDR correction
2.9 years ago k.vitting.seerup ▴ 120
0
votes
0
replies
554
views
pcaMethods percent missing interpretation
pcaMethods
3.3 years ago k.vitting.seerup ▴ 120
0
votes
3
replies
1.0k
views
Revisiting gene name inclusion in TxDB
Bioconductor GenomicFeatures TxDB
updated 2.5 years ago by • 0 • written 3.5 years ago by ▴ 120
0
votes
0
replies
1.0k
views
Comment: Comment: Revisiting gene name inclusion in TxDB
3.5 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
1.6k
views
Comment: C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
3.6 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
1.6k
views
Comment: C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
3.6 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
1.5k
views
Comment: C: Comparing discrete variable to PCA
3.7 years ago k.vitting.seerup ▴ 120
2
votes
4
replies
1.5k
views
Comparing discrete variable to PCA
EDA pcaExplorer PCAtools PCA
updated 2.4 years ago by ▴ 10 • written 3.7 years ago by ▴ 120
0
votes
0
replies
1.3k
views
Comment: C: Impose minimum restrictions on correlations in SingleR
4.2 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
1.3k
views
Comment: C: Impose minimum restrictions on correlations in SingleR
4.2 years ago k.vitting.seerup ▴ 120
2
votes
4
replies
1.3k
views
Impose minimum restrictions on correlations in SingleR
single cell R SingleR
updated 4.2 years ago by ★ 28k • written 4.3 years ago by ▴ 120
1
vote
1
reply
1.2k
views
Answer: A: Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rect
4.5 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
1.2k
views
Comment: C: Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rect
4.5 years ago k.vitting.seerup ▴ 120
3
votes
4
replies
1.4k
views
What assays are distributed with Recount TX data
recount recount2 RangedSummarizedExperiment
updated 4.6 years ago by ★ 1.0k • written 5.5 years ago by ▴ 120
5
votes
11
replies
3.8k
views
FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
rsubread featureCounts
updated 2.0 years ago by ▴ 10 • written 5.0 years ago by ▴ 120
0
votes
1
reply
3.8k
views
Comment: C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.0 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
3.8k
views
Comment: C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.0 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
3.8k
views
Comment: C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.0 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
2.5k
views
Comment: C: error in aSwitchlist (isoformswitchanalyzeR)
5.1 years ago k.vitting.seerup ▴ 120
1
vote
1
reply
2.5k
views
Answer: A: error in aSwitchlist (isoformswitchanalyzeR)
5.1 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
2.5k
views
Comment: C: error in aSwitchlist (isoformswitchanalyzeR)
5.1 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
2.5k
views
Comment: C: error in aSwitchlist (isoformswitchanalyzeR)
5.1 years ago k.vitting.seerup ▴ 120
1
vote
0
replies
1.2k
views
Comment: C: Parallel computing for IsoformSwitchAnalyzeR
5.1 years ago k.vitting.seerup ▴ 120
1
vote
1
reply
1.2k
views
Answer: A: Parallel computing for IsoformSwitchAnalyzeR
5.1 years ago k.vitting.seerup ▴ 120
1
vote
0
replies
916
views
Comment: C: Does IHW use the supplied alpha for the correction calculations?
5.2 years ago k.vitting.seerup ▴ 120
8
votes
2
replies
916
views
Does IHW use the supplied alpha for the correction calculations?
IHW deseq2
updated 5.2 years ago by ▴ 180 • written 5.2 years ago by ▴ 120
0
votes
1
reply
1.3k
views
Comment: C: Bug in rtracklayer::import of amino acid fasta sequences
5.2 years ago k.vitting.seerup ▴ 120
3
votes
3
replies
1.3k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer fasta import Biostrings
updated 5.2 years ago by ★ 11k • written 5.2 years ago by ▴ 120
0
votes
1
reply
1.2k
views
Comment: C: Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
5.4 years ago k.vitting.seerup ▴ 120
0
votes
2
replies
1.2k
views
Answer: A: Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
5.4 years ago k.vitting.seerup ▴ 120
1
vote
1
reply
4.3k
views
Comment: C: Tximport with RSEM error
5.4 years ago k.vitting.seerup ▴ 120
0
votes
1
reply
1.4k
views
Comment: C: What assays are distributed with Recount TX data
5.4 years ago k.vitting.seerup ▴ 120
3
votes
1
reply
1.1k
views
ANOVA-like test via treat() in limma
limma anova
updated 5.7 years ago by 50k • written 5.7 years ago by ▴ 120
0
votes
0
replies
1.4k
views
Answer: A: Extract sequences corresponding to TCONS IDs from spliceR
6.3 years ago k.vitting.seerup ▴ 120
0
votes
0
replies
760
views
Comment: C: for loop not working!
6.4 years ago k.vitting.seerup ▴ 120
0
votes
0
replies
1.7k
views
Comment: C: How to use limma to do regularization for Ballgown
6.4 years ago k.vitting.seerup ▴ 120
1
vote
0
replies
1.4k
views
Answer: A: RNA-seq for DGE
6.4 years ago k.vitting.seerup ▴ 120
0
votes
0
replies
987
views
Answer: A: Running model separately for each cell line or as the same model?
6.5 years ago k.vitting.seerup ▴ 120
65 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6