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Comment: Comment: IsoformSwitchAnalyzeR: What are the SV values created in design matrix?
9 months ago k.vitting.seerup ▴ 120
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1.5k
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Answer: Answer: IsoformSwitchAnalyzeR: What are the SV values created in design matrix?
9 months ago k.vitting.seerup ▴ 120
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1.8k
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Comment: Comment: Error in Create switchAnalyzeRlist
21 months ago k.vitting.seerup ▴ 120
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1
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1.8k
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Comment: Comment: Error in Create switchAnalyzeRlist
21 months ago k.vitting.seerup ▴ 120
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1
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1.8k
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Comment: Comment: Error in Create switchAnalyzeRlist
21 months ago k.vitting.seerup ▴ 120
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0
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876
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Comment: Comment: IsoformSwitchAnalyzeR package on mouse data
21 months ago k.vitting.seerup ▴ 120
2
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2
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1.8k
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Answer: Answer: Error in Create switchAnalyzeRlist
21 months ago k.vitting.seerup ▴ 120
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1
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1.1k
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Comment: Comment: Joint disperstion estimation for DEXSeq and DESeq2
2.3 years ago k.vitting.seerup ▴ 120
3
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3
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1.1k
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Joint disperstion estimation for DEXSeq and DESeq2
DESeq2 DEXseq
updated 2.3 years ago by 42k • written 2.3 years ago by ▴ 120
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844
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Comment: Comment: Turn of GSVA filtering for method ssGSEA
2.9 years ago k.vitting.seerup ▴ 120
2
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2
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844
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Turn of GSVA filtering for method ssGSEA
GSVA
2.9 years ago k.vitting.seerup ▴ 120
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1.5k
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Answer: Answer: Differential Transcript Usage: complex factorial design
2.9 years ago k.vitting.seerup ▴ 120
0
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0
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857
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Answer: Answer: IsoformSwitchAnalyzeR: pvalues before FDR correction
2.9 years ago k.vitting.seerup ▴ 120
0
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0
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567
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pcaMethods percent missing interpretation
pcaMethods
3.3 years ago k.vitting.seerup ▴ 120
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3
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1.1k
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Revisiting gene name inclusion in TxDB
Bioconductor GenomicFeatures TxDB
updated 2.5 years ago by • 0 • written 3.5 years ago by ▴ 120
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1.1k
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Comment: Comment: Revisiting gene name inclusion in TxDB
3.5 years ago k.vitting.seerup ▴ 120
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1
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1.7k
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Comment: C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
3.6 years ago k.vitting.seerup ▴ 120
0
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1
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1.7k
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Comment: C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
3.6 years ago k.vitting.seerup ▴ 120
0
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1
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1.6k
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Comment: C: Comparing discrete variable to PCA
3.7 years ago k.vitting.seerup ▴ 120
2
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4
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1.6k
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Comparing discrete variable to PCA
EDA pcaExplorer PCAtools PCA
updated 2.4 years ago by ▴ 20 • written 3.7 years ago by ▴ 120
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1.3k
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Comment: C: Impose minimum restrictions on correlations in SingleR
4.3 years ago k.vitting.seerup ▴ 120
0
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1
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1.3k
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Comment: C: Impose minimum restrictions on correlations in SingleR
4.3 years ago k.vitting.seerup ▴ 120
2
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4
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1.3k
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Impose minimum restrictions on correlations in SingleR
single cell R SingleR
updated 4.3 years ago by ★ 28k • written 4.3 years ago by ▴ 120
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1
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1.3k
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Answer: A: Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rect
4.6 years ago k.vitting.seerup ▴ 120
0
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1
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1.3k
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Comment: C: Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rect
4.6 years ago k.vitting.seerup ▴ 120
3
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4
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1.4k
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What assays are distributed with Recount TX data
recount recount2 RangedSummarizedExperiment
updated 4.7 years ago by ★ 1.0k • written 5.5 years ago by ▴ 120
5
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11
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3.9k
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FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
rsubread featureCounts
updated 2.1 years ago by ▴ 10 • written 5.1 years ago by ▴ 120
0
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1
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3.9k
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Comment: C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.0 years ago k.vitting.seerup ▴ 120
0
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1
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3.9k
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Comment: C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.1 years ago k.vitting.seerup ▴ 120
0
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1
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3.9k
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Comment: C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.1 years ago k.vitting.seerup ▴ 120
0
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1
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2.6k
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Comment: C: error in aSwitchlist (isoformswitchanalyzeR)
5.1 years ago k.vitting.seerup ▴ 120
1
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1
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2.6k
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Answer: A: error in aSwitchlist (isoformswitchanalyzeR)
5.1 years ago k.vitting.seerup ▴ 120
0
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1
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2.6k
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Comment: C: error in aSwitchlist (isoformswitchanalyzeR)
5.1 years ago k.vitting.seerup ▴ 120
0
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1
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2.6k
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Comment: C: error in aSwitchlist (isoformswitchanalyzeR)
5.1 years ago k.vitting.seerup ▴ 120
1
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0
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1.2k
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Comment: C: Parallel computing for IsoformSwitchAnalyzeR
5.2 years ago k.vitting.seerup ▴ 120
1
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1
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1.2k
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Answer: A: Parallel computing for IsoformSwitchAnalyzeR
5.2 years ago k.vitting.seerup ▴ 120
1
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0
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934
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Comment: C: Does IHW use the supplied alpha for the correction calculations?
5.2 years ago k.vitting.seerup ▴ 120
8
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2
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934
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Does IHW use the supplied alpha for the correction calculations?
IHW deseq2
updated 5.2 years ago by ▴ 180 • written 5.3 years ago by ▴ 120
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1
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1.4k
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Comment: C: Bug in rtracklayer::import of amino acid fasta sequences
5.3 years ago k.vitting.seerup ▴ 120
3
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3
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1.4k
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Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer fasta import Biostrings
updated 5.3 years ago by ★ 11k • written 5.3 years ago by ▴ 120
0
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1
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1.2k
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Comment: C: Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
5.4 years ago k.vitting.seerup ▴ 120
0
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2
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1.2k
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Answer: A: Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
5.4 years ago k.vitting.seerup ▴ 120
1
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1
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4.4k
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Comment: C: Tximport with RSEM error
5.5 years ago k.vitting.seerup ▴ 120
0
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1
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1.4k
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Comment: C: What assays are distributed with Recount TX data
5.5 years ago k.vitting.seerup ▴ 120
3
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1
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1.1k
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ANOVA-like test via treat() in limma
limma anova
updated 5.8 years ago by 50k • written 5.8 years ago by ▴ 120
0
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0
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1.4k
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Answer: A: Extract sequences corresponding to TCONS IDs from spliceR
6.4 years ago k.vitting.seerup ▴ 120
0
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0
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778
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Comment: C: for loop not working!
6.5 years ago k.vitting.seerup ▴ 120
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0
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1.7k
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Comment: C: How to use limma to do regularization for Ballgown
6.5 years ago k.vitting.seerup ▴ 120
1
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0
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1.4k
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Answer: A: RNA-seq for DGE
6.5 years ago k.vitting.seerup ▴ 120
0
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0
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1000
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Answer: A: Running model separately for each cell line or as the same model?
6.6 years ago k.vitting.seerup ▴ 120
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