Bioconductor Forum

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186

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EGSEA

2 days ago • updated 22 hours ago Chris • 0

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321

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GenomAutomorphism

updated 13 hours ago by Mike Smith ★ 6.5k • written 3 days ago by robersy • 0

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1.5k

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Limma ebayes bayesian ls

updated 22 hours ago by Gordon Smyth 50k • written 5.6 years ago by CantExitVIM ▴ 10

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1.7k

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EGSEA gene set testing vooma limma voom gsea

updated 3 hours ago by Chris • 0 • written 7.3 years ago by Pekka Kohonen ▴ 190

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149

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Proteomics limma

updated 17 hours ago by Robert Castelo ★ 3.3k • written 1 day ago by Abbey • 0

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1.4k

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ExperimentHub

updated 21 hours ago by Jiayu • 0 • written 5 months ago by yanling • 0

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244

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DESeq2

updated 18 hours ago by ATpoint ★ 4.1k • written 7 days ago by angelathuynh5 • 0

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178

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DiffBind

7 days ago • updated 16 hours ago Ian D. ▴ 70

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DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation

updated 8 hours ago by swbarnes2 ★ 1.3k • written 17 hours ago by sajadahmad41454 • 0

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2.6k

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bootRanges nullranges

updated 7 hours ago by Michael Love 42k • written 15 months ago by Poonam • 0

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treeio

23 hours ago nromerov • 0

11 results • Page 1 of 1

Recent ...

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Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0

Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

Comment: deseq2 results by swbarnes2 ★ 1.3k

Cross-posted https://www.biostars.org/p/9594331/#9594458

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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Teacher to Michael Love 42k