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DESeq2- Mysterious interaction suppresses DEGs
DESeq2
PCAplot
RNA-Seq
DesignModel
1 hour ago • updated 37 minutes ago
shaunpeterson
• 0
0
votes
3
replies
52
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 2 hours ago by
damian.szk
▴ 80 • written 5 hours ago by
ninidea
• 0
0
votes
0
replies
22
views
Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
7 hours ago
Ken C
• 0
0
votes
0
replies
20
views
Minor alleles giving NA from R biomart getBM?
biomaRt
minoralleledata
grch38
getBM
9 hours ago
Jeremy.Clark
• 0
0
votes
2
replies
87
views
DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
1 day ago • updated 23 hours ago
makala
• 0
2
votes
5
replies
186
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Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db
Bioconductor
2 days ago • updated 9 hours ago
Patadù
▴ 10
1
vote
2
replies
216
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
3 days ago • updated 23 hours ago
BioinfGuru
▴ 30
0
votes
4
replies
1.2k
views
News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
updated 9 hours ago by
angelaesper43
• 0 • written 19 months ago by
Maria Doyle
▴ 70
7
votes
38
replies
5.7k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 11 hours ago by
Johannes Rainer
★ 2.0k • written 5.5 years ago by
Guido Hooiveld
★ 4.0k
0
votes
3
replies
2.1k
views
maSigPro genes from clusters
masigpro
clustering
updated 2 hours ago by
anne-laure
• 0 • written 7.9 years ago by
ls299
• 0
10 results • Page
1 of 1
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Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters
by
anne-laure
• 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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