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question regarding gviz
rtracklayer
Gviz
rtracklayer
Gviz
13.0 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
2.4k
views
emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
13.0 years ago
Malcolm Cook
★ 1.6k
0
votes
8
replies
3.0k
views
normalization of illumina bead array data
PROcess
PROcess
updated 13.0 years ago by
Michele
▴ 90 • written 13.0 years ago by
Wei Shi
★ 3.6k
0
votes
12
replies
3.1k
views
new package for generating interactive HTML reports
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
updated 13.0 years ago by
Malcolm Cook
★ 1.6k • written 13.0 years ago by
Josh Kaminker
▴ 20
0
votes
0
replies
1.1k
views
RNA Seq Profiling Experiment
edgeR
edgeR
13.0 years ago
empyrean999
▴ 10
0
votes
8
replies
2.8k
views
vsn preprocess with oligo package
vsn
oligo
oligoClasses
vsn
oligo
oligoClasses
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
José LÓPEZ
▴ 110
0
votes
12
replies
3.0k
views
Pasilla data for "Counting with summarizeOverlaps/GenomicRanges"
updated 13.0 years ago by
Valerie Obenchain
★ 6.8k • written 13.0 years ago by
Darwin Sorento Dichmann
▴ 50
0
votes
4
replies
2.1k
views
Using GenomicRanges with table data
IRanges
GenomicRanges
IRanges
GenomicRanges
updated 13.0 years ago by
Steve Lianoglou
★ 13k • written 13.0 years ago by
Tom Oates
▴ 60
0
votes
5
replies
3.4k
views
parallel and GSVA
PROcess
GSVA
PROcess
GSVA
updated 13.0 years ago by
Steve Lianoglou
★ 13k • written 13.0 years ago by
David Iles
▴ 130
0
votes
1
reply
3.0k
views
edgeR continuous variables
edgeR
edgeR
updated 13.0 years ago by
Mark Robinson
▴ 880 • written 13.0 years ago by
Fredrik Karlsson
▴ 10
0
votes
0
replies
931
views
Stay in touch with me through LinkedIn
Network
Network
13.0 years ago
Shreyartha Mukherjee
▴ 80
0
votes
0
replies
874
views
Windows or Excel to R txt file
13.0 years ago
boczniak767
▴ 740
0
votes
4
replies
1.7k
views
xps: hugene11 chip gives problems
Microarray
Annotation
xps
Microarray
Annotation
xps
updated 13.0 years ago by
cstrato
★ 3.9k • written 13.0 years ago by
Groot, Philip de
▴ 630
0
votes
0
replies
1.0k
views
Error installing iFlow (Jaques Fattaccioli)
Cancer
iFlow
BiocInstaller
Cancer
iFlow
BiocInstaller
13.0 years ago
Finak, Greg
▴ 40
0
votes
4
replies
1.6k
views
ggbio : misplaced tracks in a test case
updated 13.0 years ago by
Tengfei Yin
▴ 420 • written 13.0 years ago by
Abhishek Pratap
▴ 410
0
votes
0
replies
1.2k
views
EdgeR Time Series Design leading to unequal replicates
13.0 years ago
Marcelo
▴ 10
2
votes
3
replies
13k
views
subset GRanges
updated 13.0 years ago by
Steve Lianoglou
★ 13k • written 13.0 years ago by
Wim Kreinen
▴ 100
0
votes
0
replies
1.0k
views
detailed analysis process of Comparisons Both Between and Within Subjects of edgeR
PROcess
edgeR
PROcess
edgeR
13.0 years ago
Gordon Smyth
53k
0
votes
4
replies
3.0k
views
minfi - how to subset a GenomicMethylSet by chromosome/seqname
Microarray
Annotation
PROcess
minfi
Microarray
Annotation
PROcess
minfi
updated 13.0 years ago by
Tim Triche
★ 4.2k • written 13.0 years ago by
Toby Hughes
▴ 30
0
votes
1
reply
1.3k
views
AffylmGUI freezes with recent updates of Windows 7 Enterprise Service Pack 1
Cancer
affylmGUI
Cancer
affylmGUI
updated 13.0 years ago by
Keith Satterley
▴ 450 • written 13.0 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
951
views
Nimblegen arrays; random probes
Normalization
Normalization
updated 13.0 years ago by
Todd Richmond
▴ 30 • written 13.0 years ago by
María José Rivas
▴ 20
0
votes
0
replies
963
views
Data analyst job at Novartis
13.0 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
1.2k
views
Conference Announcement - CAMDA 2013
Genetics
Genetics
13.0 years ago
CAMDA 2013
▴ 30
0
votes
0
replies
1.1k
views
Using different file formats with oligo and analysis packages using oligo
SNP
Microarray
qPCR
cycle
SNP
Microarray
qPCR
cycle
13.0 years ago
Hans Thompson
▴ 30
0
votes
1
reply
1.6k
views
easyRNAseq remove overlapping features
Annotation
BSgenome
BSgenome
IRanges
easyRNASeq
Annotation
BSgenome
BSgenome
IRanges
updated 13.0 years ago by
delhomme@embl.de
★ 1.2k • written 13.0 years ago by
Vince Schulz
▴ 160
0
votes
4
replies
3.2k
views
Problems with 'affxparser' package
oligoClasses
oligoClasses
13.0 years ago
Valor Becerra, Luis Miguel
▴ 30
0
votes
0
replies
1.4k
views
We've posted our 2013***R Courses*** by XLSolutions Corp at 9 USA Cities: San Francisco, New York, Washington DC, Houston, Boston, Las Vegas, Seattle…
Clustering
Clustering
13.0 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
0
replies
1.0k
views
quick question : creating ideogram for a in-house genome
ideogram
ideogram
13.0 years ago
Abhishek Pratap
▴ 410
0
votes
0
replies
816
views
Bos taurus genome
Cancer
BSgenome
BSgenome
Cancer
BSgenome
BSgenome
13.0 years ago
Hervé Pagès
16k
0
votes
1
reply
1.4k
views
rtracklayer export method requires unique names
rtracklayer
rtracklayer
updated 13.0 years ago by
Michael Lawrence
★ 11k • written 13.0 years ago by
Samuel Younkin
▴ 60
0
votes
2
replies
3.2k
views
biomaRt does not load archived Ensembl Genes database anymore.
GO
biomaRt
Vega
GO
biomaRt
Vega
updated 13.0 years ago by
Steffen Durinck
▴ 540 • written 13.0 years ago by
J.H. Brandsma
▴ 20
0
votes
2
replies
3.1k
views
Limma Voom R package
limma
limma
updated 13.0 years ago by
Wei Shi
★ 3.6k • written 13.0 years ago by
Pedro Blecua
▴ 10
0
votes
6
replies
4.2k
views
topGO quick start guide error
topGO
topGO
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
Fix Ace
▴ 100
0
votes
2
replies
1.2k
views
Error installing iFlow
iFlow
BiocInstaller
iFlow
BiocInstaller
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
Jacques Fattaccioli [ENS]
▴ 10
0
votes
4
replies
1.2k
views
DESeq package error
DESeq
DESeq
updated 13.0 years ago by
Dan Tenenbaum
★ 8.2k • written 13.0 years ago by
Fares Z. Najar, Ph.D.
▴ 30
0
votes
0
replies
664
views
reducing hits from countGenomicOverlaps()
Cancer
Cancer
13.0 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
823
views
time series expression data
13.0 years ago
Adrian Johnson
▴ 330
0
votes
4
replies
2.3k
views
GEOquery getGEO error in read.table
Microarray
GEOquery
Microarray
GEOquery
updated 13.0 years ago by
TEXTORIS Julien
▴ 160 • written 13.0 years ago by
Dave Tang
▴ 210
0
votes
0
replies
1.5k
views
Bioinformatics Position Opening
Proteomics
Infrastructure
Proteomics
Infrastructure
13.0 years ago
Thomas Girke
★ 1.7k
0
votes
2
replies
3.1k
views
strategy to match/align peptide sequence to protein
updated 13.0 years ago by
Hervé Pagès
16k • written 13.0 years ago by
Juliet Hannah
▴ 360
0
votes
1
reply
695
views
detailed analysis process of \"Comparisons Both Between
updated 13.0 years ago by
Ryan C. Thompson
★ 7.9k • written 13.0 years ago by
Huajing Teng
▴ 20
0
votes
2
replies
1.1k
views
detailed analysis process of \"Comparisons Both Between and Within Subjects\" of edgeR
edgeR
edgeR
updated 13.0 years ago by
Ryan C. Thompson
★ 7.9k • written 13.0 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
Post-doc position available
13.0 years ago
rgentleman
★ 5.5k
0
votes
1
reply
1.4k
views
getting an error with ggbio
PROMISE
PROMISE
13.0 years ago
Abhishek Pratap
▴ 410
0
votes
3
replies
1.9k
views
help with visualizing structural variation data
ggbio
ggbio
13.0 years ago
Abhishek Pratap
▴ 410
0
votes
3
replies
1.4k
views
need help regarding quality assessment of raw data
arrayQualityMetrics
arrayQualityMetrics
updated 13.0 years ago by
Steve Lianoglou
★ 13k • written 13.0 years ago by
varshika singh
▴ 20
0
votes
3
replies
1.4k
views
Double KO and timecourse design / limma
Microarray
TimeCourse
timecourse
Microarray
TimeCourse
timecourse
updated 13.0 years ago by
Gordon Smyth
53k • written 13.0 years ago by
TEXTORIS Julien
▴ 160
0
votes
0
replies
1.2k
views
[methylumi] concerning methylumi.bgcorr function and out-of-band intensities
methylumi
methylumi
13.0 years ago
Dylan Aïssi
▴ 30
0
votes
3
replies
1.7k
views
Problem with biomaRt update in R-2.15.1
biomaRt
biomaRt
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
Guest User
★ 13k
0
votes
1
reply
1.0k
views
Problem in KEGGSOAP package
KEGGSOAP
KEGGSOAP
updated 13.0 years ago by
Dan Tenenbaum
★ 8.2k • written 13.0 years ago by
Asta Laiho
▴ 120
46,699 results • Page
558 of 934
Recent ...
Replies
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ATpoint
★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open!
by
TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data
by
TikTsokaasocissalpc
• 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
• 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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