0
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0
replies
1.7k
views
Working with GERP scores
Coverage Coverage
13.7 years ago Paul Leo ▴ 970
0
votes
1
reply
1.3k
views
ChIPpeakAnno
AnnotationData AnnotationData
updated 13.7 years ago by ★ 4.3k • written 13.7 years ago by ★ 13k
0
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1
reply
1.1k
views
BiomaRt Query error Edited
SNP biomaRt SNP biomaRt
updated 13.7 years ago by ★ 7.2k • written 13.7 years ago by ▴ 760
0
votes
0
replies
1.1k
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output from "getChipInfo" prevents Illumina ProbeID conversion
Annotation Normalization convert lumi Annotation Normalization convert lumi
13.7 years ago Pan Du ▴ 440
0
votes
3
replies
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batch effects 450K
Clustering Cancer Breast minfi sva Clustering Cancer Breast minfi sva
updated 13.7 years ago by ▴ 110 • written 13.7 years ago by ★ 13k
0
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1
reply
1.5k
views
GOSemSim comparison between species
Yeast GOSemSim Yeast GOSemSim
updated 13.7 years ago by ★ 8.2k • written 13.7 years ago by ▴ 10
0
votes
11
replies
3.5k
views
"graphite" Biocarta 'native' graphs different from Biocarta web site?
Transcription Pathways Leukemia graphite Transcription Pathways Leukemia graphite
13.7 years ago Hamid Bolouri ▴ 90
0
votes
2
replies
1.4k
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Question about locked environments
cdf probe cdf probe
updated 13.7 years ago by 25k • written 13.7 years ago by ★ 2.0k
0
votes
0
replies
1.1k
views
TEQC package isssue with chromosome format
Coverage Coverage
13.7 years ago nac ▴ 280
0
votes
2
replies
1.5k
views
gplots error
updated 13.7 years ago by ★ 8.2k • written 13.7 years ago by ★ 13k
0
votes
1
reply
4.2k
views
Changing the Scale of GViz Data track
Gviz Gviz
updated 13.7 years ago by ▴ 540 • written 13.7 years ago by ▴ 30
0
votes
1
reply
694
views
problem about set operation and computation after split
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ★ 13k
0
votes
7
replies
2.1k
views
Amplicon and exon level read counts and GC content
Coverage Cancer Coverage Cancer
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 440
0
votes
11
replies
2.4k
views
base-specific read counts
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 440
0
votes
0
replies
1.4k
views
Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
13.7 years ago Yoo, Seungyeul ▴ 110
0
votes
15
replies
4.0k
views
Rsubread crashes in 32bit linux
Yeast Rsubread Yeast Rsubread
updated 13.7 years ago by ★ 3.6k • written 13.7 years ago by ★ 3.4k
0
votes
5
replies
1.4k
views
Question about ChIPpeakAnno
annotate annotate
13.7 years ago Julie Zhu ★ 4.3k
0
votes
4
replies
1.4k
views
readGappedAlignmentPairs with multimapping reads
GenomicRanges GenomicRanges
updated 13.7 years ago by 16k • written 13.7 years ago by ★ 13k
0
votes
0
replies
2.3k
views
pvclust error
Clustering Clustering
13.7 years ago Alyaa Mahmoud ▴ 440
0
votes
3
replies
2.9k
views
shortread quality
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 860
0
votes
4
replies
5.2k
views
Uploading BED file: rtracklayer
rtracklayer rtracklayer
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ▴ 50
1
vote
0
replies
2.0k
views
minfi - missing values
13.7 years ago haroon naeem ▴ 20
0
votes
0
replies
761
views
BioC2012: upcoming deadlines
Cancer Cancer
13.7 years ago Martin Morgan 25k
0
votes
0
replies
934
views
BiomaRt query error
SNP biomaRt SNP biomaRt
13.7 years ago Voke AO ▴ 760
0
votes
1
reply
1.4k
views
Increasing Stringency of GRanges Overlap
updated 13.7 years ago by ★ 4.2k • written 13.7 years ago by ▴ 30
0
votes
0
replies
1.4k
views
Bioconductor package cellHTS2
cellHTS cellHTS2 cellHTS cellHTS2
13.7 years ago Joseph Barry ▴ 160
0
votes
5
replies
2.2k
views
predicting transcription factors
Transcription Transcription
updated 13.7 years ago by ▴ 750 • written 13.7 years ago by ▴ 380
0
votes
4
replies
1.7k
views
DEXSeq package: Error in DEXSeqHTML
DEXSeq DEXSeq
updated 13.7 years ago by ★ 1.9k • written 13.7 years ago by ▴ 50
0
votes
0
replies
1.8k
views
edgeR Error in `colnames<-`(`*tmp*`, value = c(\"1\", \"2\", \"3\", \"4\")) :
edgeR edgeR
13.7 years ago Guest User ★ 13k
0
votes
1
reply
1.3k
views
oligo: error in crlmm function
SNP oligo SNP oligo
updated 13.7 years ago by ★ 4.3k • written 13.7 years ago by ▴ 840
0
votes
2
replies
983
views
[ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9
GO Cancer GO Cancer
updated 13.7 years ago by ★ 8.2k • written 13.7 years ago by 25k
0
votes
4
replies
2.3k
views
edgeR: summary of differentially expressed genes or tags
edgeR edgeR
updated 13.7 years ago by 53k • written 13.7 years ago by ▴ 420
0
votes
5
replies
2.2k
views
Unable to perform GCRMA/RMA with cdf file 'mogene11stv1mmentrezgcdf'
Microarray Normalization cdf gcrma Microarray Normalization cdf gcrma
updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 30
0
votes
1
reply
1.1k
views
FW: Gene list annotation
Annotation GO annotate limma GOstats topGO Annotation GO annotate limma GOstats topGO
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Gene list annotation
Annotation GO annotate Annotation GO annotate
updated 13.7 years ago by 21k • written 13.7 years ago by ★ 13k
0
votes
2
replies
981
views
Replacing commas with new lines in R
Annotation Annotation
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 760
0
votes
1
reply
813
views
Rsamtools yieldTabix Skips Comment Lines
updated 13.7 years ago by 25k • written 13.7 years ago by ★ 1.6k
0
votes
2
replies
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oligo and pdInfoBuilder
Annotation Yeast oligo pdInfoBuilder Annotation Yeast oligo pdInfoBuilder
updated 13.7 years ago by 6.7k • written 13.7 years ago by ▴ 340
0
votes
3
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 13.7 years ago by 6.7k • written 13.7 years ago by ▴ 20
0
votes
0
replies
1.0k
views
pairwiseAlignment of PDB files to canonical protein structure
Alignment Biostrings PROcess Alignment Biostrings PROcess
13.7 years ago Gregory Ryslik ▴ 10
0
votes
2
replies
3.2k
views
estimateLogicle from flowCore produces \"Error in eval(expr, envir, enclos) : object \'tr\' not found\" error
flowCore flowCore
13.7 years ago Guest User ★ 13k
0
votes
0
replies
994
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy plier xps cdf affy plier xps
13.7 years ago cstrato ★ 3.9k
0
votes
1
reply
4.0k
views
voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization graph limma convert edgeR DESeq Rsubread Normalization graph limma convert
updated 3.1 years ago by 53k • written 13.7 years ago by ★ 6.5k
0
votes
3
replies
1.5k
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf affy xps cdf affy xps
updated 13.7 years ago by ★ 3.9k • written 13.7 years ago by ★ 13k
0
votes
2
replies
3.0k
views
edgeR: topTags
limma edgeR limma edgeR
updated 13.7 years ago by ▴ 420 • written 13.7 years ago by ▴ 370
0
votes
7
replies
2.4k
views
qrqc with variable length of short reads? - readSeqFile could not handle a 2GB zipped file.
qrqc qrqc
updated 13.7 years ago by ★ 1.7k • written 13.7 years ago by ▴ 230
1
vote
3
replies
48k
views
error in hclust function
updated 13.7 years ago by ★ 1.7k • written 13.7 years ago by ▴ 440
0
votes
4
replies
1.4k
views
frmaTools: error with 'convertPlatform'
cdf affy convert cdf affy convert
updated 13.7 years ago by ▴ 830 • written 13.7 years ago by ★ 4.1k
0
votes
3
replies
3.4k
views
Is it possible to read in Bluefuse and Agilent files together using read.maimages() function in limma?
Cancer Cancer
updated 13.7 years ago by 53k • written 13.7 years ago by ▴ 40
0
votes
0
replies
3.1k
views
qrqc with error message of "unable to start device PNG" and "unable to open connection to X11 display"?
GO qrqc ASSIGN GO qrqc ASSIGN
13.7 years ago Sang Chul Choi ▴ 230
46,743 results • Page 586 of 935
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Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
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C: z-score with DESeq2?
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